Miscanthus floridulus: 136514452
Help
Entry
136514452 CDS
T10264
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136514452
03036 Chromosome and associated proteins [BR:
mflo03036
]
136514452
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
136514452
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
136514452
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
HHH_9
Tex_central_region
Tex_N
SH2
MRP-S34
Motif
Other DBs
NCBI-GeneID:
136514452
NCBI-ProteinID:
XP_066364502
LinkDB
All DBs
Position
16:96915595..96923599
Genome browser
AA seq
1401 aa
AA seq
DB search
MGRTVLSDEEEDEIEADEEDPRSYRRGRGDMNEHDDDDDDEDDEDGQDEFEKDDFIVDDE
EEEVEGEEEEQKSDDERRRKKKKKKRESEDFMLDEDDYMLLQDNNITGISRPKPGNKFKR
LKKAGRESEMDEHSGFSDGDGTGKKRSGEERVEYSLFGDHHDAAPFEEDFEDDQQAGEGE
EEVGDDEDEMADFIVEEDEIDGNGQVVRRKKFKKKVPRQAAGVSSSALQEAQDIFGDVDE
LLALRKQELEREAANSSELRGTRLEDEFEPFILAEKYMTSKDEQIKENDVPERMQLSEEL
TGYPPTDKTMIEEESLWIHSHLTGDGFLSFFGNERMNKDIDQKDIVNVVTMLHVNKFEIP
FIAMYRKESCPTLLKSLDSDEGNEDNKDNKSDAHKMKWHKLLWAVQTLDRKWLLLQKRKV
ALQLYYEKRFDDEKRRIDDVTRQELNSQLYNSIIEALKDAKSEKEVEDVDAKFNLHFPPG
EVEEEGQFKRPKRKSLYSICHKAGLWEVANQFGRSAEQLGHHLTLTKIPEAGELESGRHS
PEEVAANFTCAMFETPQDVLRGARHMAAVEIGCEPIVRKHVRGIFMNKAVVSTSPTPEGN
TIIDPYHQLSGVKWLREKPLSKFVDAQWLLIQKAEEEKLLKVTVKLPEDAKKKLMSEARE
NYLSDCVSKSAQLWDEQRKMILDDAFFNFLLPSMEKEARSLLTAKAKQWLHMEYGKQLWN
KVTVAPWRKKDADKKDADIDLDDESELRVMACCWGPGKPATTFVMLDSSGELVDVLYAGS
ISNRSQGVAEQQRKKNDQQRVLKFMTDHQPHVVCVGASNYNCRQLKDDIYEVIFKIVEDH
PRDVNPQMENLSVVYGDESVPRLYENSRISSDQLPGQSGIVKRAVALGRYLQNPLAMIAT
LCGPGKEILSWKLHALEQFLTPDEKYEVVEQVMVDATNQIGFDVNLAASHEWHFSTLQFI
AGLGPRKASALQKDLVREGSIFSRKELVKPLGRKVFMNASGFLRVRRSGAAAASAQLIDL
LEDTRIHPESYVLAKNLAKDVYVEDAQHEINEMDDDEQEMAIEHVRADPKMLKRLEIEEY
IKSISEEYRKLETLLDIKEELLSGFSDWRTPYTEPSPEQEFWMLSGETEDTISDGRIVQV
TVRNIQENKIICTFDSGLKAIVMTDNYSDEGFDPESSQLREGDVLTGKIRNVNKNRFMVY
LTCKASEMRRRPFSRGDQDPYYHEQDMTSQTVEDKARKQKELAKKHFKPRMIVHPHFQNL
TAEEAMQFLSDKEHGEKVIRPSSRGPSFLTLTLKIFDGVYAHKEITESGKDHKDITRLLR
LGKTLTIDNETFEDLDEVIDRYVDPLVGHLKSMLSYRKFRKGLKNEVDEMLRAEKAENPM
RILYSFGISHEHPGTFILYIY
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcacggtgctctccgatgaggaagaagatgagattgaggccgacgaggaggat
ccgcggtcctaccggaggggcaggggcgatatgaacgagcacgacgatgatgacgatgat
gaagacgacgaggatggtcaggatgaatttgagaaggatgacttcatagtggacgatgag
gaagaagaagtggaaggagaggaagaggaacagaagagtgatgatgagaggcgaagaaag
aaaaagaaaaagaagagggaatcagaggatttcatgcttgatgaggatgactatatgttg
ctccaggataataacatcactggcatcagtcgcccaaagcctggaaacaagtttaagcgc
ttgaaaaaggctggaagggaatctgaaatggatgagcactctggtttttcagacggtgat
ggaacagggaaaaaacgcagtggcgaggagagagtcgagtacagtttatttggtgatcat
catgatgctgcaccatttgaggaggacttcgaggatgatcagcaggcaggggagggtgag
gaggaagttggtgatgatgaagatgaaatggcagatttcattgtggaggaagatgaaatc
gatgggaatggacaagttgtaaggaggaagaaatttaaaaagaaggtaccacgacaagca
gcaggtgtatcgtcatctgctctgcaagaggcccaagacatatttggtgatgttgatgag
ctgctagcactaagaaagcaagagcttgagagggaggctgctaactccagtgagttaaga
gggacgaggcttgaagatgagtttgagccatttattcttgcagagaagtatatgacatca
aaagatgagcaaataaaagaaaatgatgtcccggagaggatgcagttgtctgaagagttg
actgggtatcctccaacggataaaacgatgattgaggaagagagtttatggatacacagc
cacctaactggtgatggatttctgtccttttttggcaatgagcgcatgaacaaggatatt
gaccagaaggacattgttaacgtcgtgaccatgttgcatgtcaacaaatttgaaattccg
ttcattgcaatgtacagaaaagagagttgtccaaccctattaaaaagcctcgattctgat
gagggtaatgaggataataaggataataaatctgatgcacacaaaatgaagtggcataag
ttgctctgggcagttcagaccttagacagaaagtggctacttcttcagaagcgcaaggtt
gctttacagttgtattatgagaaaagatttgatgatgagaaacggaggatagatgatgtc
acaaggcaagaacttaatagccaactttataattccatcattgaagcactaaaggatgct
aaatctgagaaagaggtggaggatgttgatgcaaaattcaatttacattttcctcctggt
gaagtagaagaagaaggccaatttaaacgtcctaaaaggaaatccttgtacagtatctgt
cacaaggcagggttatgggaggttgccaaccaatttgggcgcagtgctgagcaattaggc
caccatctgacattaactaagatacctgaagcaggcgagcttgagagcggtagacattct
cctgaagaggttgctgcaaatttcacatgtgcaatgtttgaaacaccacaagatgttctt
cggggcgcgaggcacatggcagcagttgagataggttgtgagccaattgtgagaaagcat
gttcgaggcatcttcatgaataaagcagttgtgtcaacaagtcccacacctgagggcaat
acaatcatagatccatatcatcagctatcgggtgttaagtggttgagagagaaaccactt
agcaagtttgtagatgcacagtggcttcttattcagaaagcagaggaagaaaagctcctc
aaggttaccgtaaaattgccagaagatgcaaagaaaaaactcatgtctgaagcacgtgag
aattatctaagtgattgtgtcagcaagtctgcacaactgtgggatgagcaacggaagatg
atactggatgatgccttcttcaatttccttcttccatcaatggaaaaggaagctcgatca
ctgttgacggcaaaagccaaacaatggctccatatggaatatgggaaacagttgtggaac
aaggttactgttgctccttggaggaagaaagatgcagacaagaaggatgctgacattgat
ttggatgatgaatcggaattgagagttatggcctgctgctggggtcctgggaagccagca
accacttttgttatgttagactcctcaggagagttggttgatgttctgtatgcgggttct
atcagtaacaggtctcaaggtgtcgctgagcagcagcggaagaagaatgaccagcaacga
gtcttaaagtttatgactgatcatcagccacatgttgtgtgtgtaggagcatcaaactac
aattgcagacaactgaaggatgatatttatgaggttatttttaaaattgtagaggaccat
ccaagagacgttaacccccaaatggaaaatttgagcgttgtctatggtgacgagtctgtg
cctcgcttgtatgagaactctcgaatatcttcggatcaacttcctgggcagtcaggtatt
gtgaagcgggctgtagcgcttggacgttaccttcagaatccattggcgatgattgcaaca
ctgtgtggacctgggaaagagatactttcttggaaactgcatgcactggaacagtttctg
actcctgatgagaagtatgaagttgttgagcaagtaatggttgatgcaacgaatcagata
ggttttgacgttaatcttgctgctagccatgagtggcatttttctactctacaatttatt
gctggtttgggtccgcgcaaagcttctgctttgcagaaagatctggtgagagagggatcc
atttttagtcgcaaggagcttgtcaaacctctagggaggaaagtcttcatgaatgcttct
gggtttttacgtgttcggcggagtggtgcagctgcagccagtgctcaactcattgatctg
ctcgaggatacaaggatccatcctgaatcatatgtattagcaaaaaatttggctaaggat
gtctatgttgaggatgcacagcatgaaataaatgaaatggatgatgacgagcaagagatg
gcgattgagcatgttagagcagacccaaaaatgcttaaacgtcttgaaatagaggaatat
ataaagagcatttcagaagaataccgtaaattggaaactctgttggatataaaggaagag
ctgctgtctggtttttctgactggaggaccccctatactgagccaagcccagaacaggaa
ttctggatgctttctggtgaaactgaggataccatatctgatggaaggattgttcaagta
actgtgcgcaatatacaagagaacaaaataatttgcacctttgattctggtttgaaagcc
atagttatgaccgacaactattctgatgagggttttgatccagaatcatcacagttacgt
gaaggtgatgtattaactggtaaaattcgaaacgtgaataaaaataggttcatggtttac
ctaacgtgcaaggcgagtgagatgaggagaaggccattctccagaggtgatcaggatcct
tattatcacgaacaagacatgacctcacaaacggtagaagataaggctcggaaacaaaag
gaacttgcaaagaagcatttcaagccccgaatgattgttcatccccactttcagaacctg
acagccgaagaagccatgcagtttttgtcagataaagagcatggtgagaaggtgatccgg
ccaagttccaggggaccatcttttttgacacttaccctgaaaatttttgatggcgtctat
gcacacaaggagataaccgaaagtggaaaagatcacaaagatatcacaaggttgcttcgc
ctagggaaaacactaacaattgacaatgaaacttttgaagacctcgatgaggtcattgac
agatatgtggacccattggtaggacacctgaagagcatgctctcttatcgtaaattcaga
aagggtttaaaaaatgaggttgatgagatgttaagggcagagaaagcagagaaccctatg
agaatactgtatagttttggcatctctcacgaacatcctggcacctttatattgtacata
tattag
DBGET
integrated database retrieval system
