Miscanthus floridulus: 136515666
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Entry
136515666 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein
KO
K19026
spatacsin
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136515666
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
136515666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
136515666
NCBI-ProteinID:
XP_066365294
LinkDB
All DBs
Position
2:5347591..5381902
Genome browser
AA seq
3101 aa
AA seq
DB search
MSTSRQIDDGPGVLQLCRWTVLQPHLKLSEFREAFISPTRRLFGLLSEHGDLVLATAEVN
PSQVESHRALSDTCTQAVFEMLSTIPRVKSLSWGYCSDAFDDSSFNEILVVSSDTSITVH
AFCRSHKSTLAVNSTSDAKELHGEWKEWHPTECAVLEDGESGPKKWFCSFLTTITSSVSN
GKYQARFPMKSLLPNSAEVVSFSIYDITLSFLKFWYSKCSLKTMPETGSESPRSFLSSLP
VAEASCSCQWECLKVLSSSSGYLIGLVLTPNESVSCEAHPSNAECILVAVLELNHWGIQW
NFVADLQDACDGIRPSSKWVDFQLSDVFLTCLNTAGFVAIWNVKTGGLATSFSVLQQCRT
DLEMPLRSSMPIVTNLDGGNIPVENFVGRMFKRLVLASYSCLLAVVDEVGVVYVFYADDI
LNFKANVHEIIDLPVMNHFADCFSTWEAAGHEIGSLSFCTNQSIRGSLNLAKLVPEFSGK
TDVVIARPRKRRKYRCNENEVDSWPSGFVTTGQMKVGVAYPHTNSSSFLRRIILPPCRSQ
QDVISLSPLGLTRIFKGSITDGNEHVKIFHSELLMYSSFLGKGDIDVGLMDKMLPFQKDS
AFVGDSVVCSCQGYLYLITQYGLSVVLPPVSVSSFSSHGDTIKFWQPGSATGSTCNALNL
LSVDRSETSWKTWQIEVLDRALLYEGPALADRLCWENGWDLKFSRLRWLQLALHYSMIGD
LEQSLNLLAEVNLAEEGVLQLLLASIHRLSSRTGSDNEAAVSSKLMVLAVRFATRMIKCY
GLQKQNTDNNSVKLHEMALLLMVIRSIQSRISAKNQNSVRTGDDKNSLNIGTEVFQNDSL
LPVVVVDGVSSGPSGGLDAYDRQESAPVLVPDSNIMLALTPVESSLSASTLHDIDTNKGT
TQVGRQIIQGNIKEMINRWEMNNFDSKTVVREALQSGRLPLAVLQLQLLRQREFVSNDDS
GDAFSEVHEIGRSIVYDLLTKGETGLAVATLERLGDDVESDLRELMQGTVRRSLRLQIAD
EMKKRGYIRPNEWKMLETITLIERLYPSSSFWDTYFCRENVIRDAAKIVTLPGEDKPVLA
LHIRNHPIIECGDVDGAVLGSWVNINDYTKEFSGSNVSDGYWACAAVWSDAWDQRTVDRI
LLDQPYHIHAHIPWESQFEYFVAHNDAGKVCNLLDMIPNSILSEGIIRVNVDSLQAAANT
LSDLTLPDYNMYICDSEELEPVCMEIPHVKVFRSLCNHESTLYIRMVMQQELAKKHIFMK
EYWQSTTEIIPLLARAGILIKVGSKEECSTTSFASEMPDDAHHQGREGALHKLIIRFCVQ
YNLPYLLDLYLDICNLAPEKDSYPLLKETAGDCKWAQWLLFSRIKGHEYEASFSNACWNL
SKKTVSNSSLTAVEIDEMLYTVDDMAERIGEMSALATLMYASAPIQKSICTGSVNRSGSS
SQCTLENLAPCLQQFPTLWKTLFSSCFGQDEYGCLNYSAGNVFGKRSISEYLRWRYSIFS
SAGGDTSLLQMLPCWVPKSIRRLIQLFEQGPFGMQLLSNVPSPEELFTHNVTDYIYNSTG
YTEASALSLEASIQKSVEEELYSSLEEKDVRVEHHLHRGRALAAFRHLIAKRASQLKSAS
ARQVISAQSNVQADVQLMLAPLSQAERSILISVAPLAITNFEDLTLVASCIFLLELCGHC
ANMLRLDIAALRRISSYYKSVRENKHADLSSQRAPELHVQSHGAGIAPALARALAEDYVQ
SDHLHVLEQTQTSMAPKKEQPQHPLIAILQHLEKASLPSLEEDKTCGFWLLTGVGNAALY
RSQQNEASQHWNLVTEFCQAHHLPLSTKYLALLANDNDWVGFLTEAQIAGFPIEVVIEVA
AKEIRDSRLRTHILTVLKNMMSLRRKASGNIPSGSSYSSFSAVDGNNPMELFCILGVCEK
QKNPGEALLIKAKQMQWSLLAMIASCFPDVTPLSCLSVWLEITAAREMSSIKVDDVSSKI
AKNVGSAVEATNKLPSSGRNVEFRYNRKNPKRRRFLEASQEKLTICFSLDSTCGPDSAAT
SNPTNIDDHQEGGKPISVDIDERLASLSNMVAVLCEQQLFLPLLRAFEMFLPSCSLLSFI
RTLQAFSQMRLSEASAHLASFSTRIKDEASHTQLNSSKEVSVIAEWVAVTAVKAADAVLS
TCPSIYEKRCLLQLLSAVDFADGGTSSSYFSRRYWKINLSEPSLCKDGDIYNWNDLMDDA
SLLTSLEKDGQWEQARTWARQLESSGIAWESTLDHVTESQAEAMVAEWKEFLWDIPQERA
ALWGHCQSLFMRYSFPPFKAGLFFLKHAEAVGKEIPAQELHEILLLSLQWLSGTMTKSPP
VYPLHLLREIETRVWLLAVESESQSKADGEFATSAVAQNIAVGNSSSIIEQTADVITKID
SNMSSPHMKVTERNGTRDSLSSQHVQLFESNSEASSTTINNTRAKRRVKTSSPLRRGAND
NIESRTNELDNNSNSFHSSKIGEQPRNLLSEEEFAKMEASLSGWEQNVRPVDMEKAVLSL
LEFGQITAAKQLQQKLSPSYIPEELVLVDVALRIANSSSSGEISLLCFDTQALSILQSLE
VANSCDMISPSQVMEILAVKCGEGRGRALIRRIIAIVRTAKLLGLPFSEAFEKQPIELLQ
LLSLKAQDSFDEAKFLVETHIMPASSIARIIADSFLKGLLAAHRGGYLDSQKEEGPAPLL
WRSSDFLKWAKLCPSESEIGHALMRLVMTGHEVPHACEVELLILSHHFYMSSSCLDGVDV
LVTFAANRVESYVSEGDFSCLARLITGVSNFHSLSFILSILVENGQLELLLQKYSATDTA
TGTPASVRGFRMAVITSLKQFNPNDDDALSMVYKHFDMKHEAASLLELRAEQYMNSWLSR
YDKERRNDELLEAMHHLVETAEVLSTIDAGQRTHRACARASVLSLQIRIPDLMWIGLSET
NARRIFVEQSRFQEALIVAEAYNINQPIEWAPVFWNQMLKPDLIEQFVAEFVSVLPLQPP
MLLELARFYRAEVAARGEQSHFSVWLSPGGLPAEWVKHLGRSFRSLLRRTRDMRLRLQLA
TLATGFIDVLDICNRVLDKVPDNAGPLILRKGHGGAYLPLM
NT seq
9306 nt
NT seq
+upstream
nt +downstream
nt
atgtccacatctcgtcagatagatgatggacctggtgtactacagttatgcagatggacg
gtgttacaaccccatctcaaactatcagaatttcgagaggcttttatatctccaacaagg
cgtctttttggactgctctcagaacatggggatcttgtcctggcaactgctgaggtcaac
ccatcacaagttgagtcacatagagctctctcagatacctgtactcaggcagtcttcgaa
atgctttctactattccgagagtgaagtctttgtcatggggatactgttctgatgctttt
gatgactcaagttttaatgaaattcttgtggtatctagtgatacttctatcacagtccat
gcattctgccgttctcacaaaagcacactagcagttaattccacgtctgatgctaaagag
ttgcatggggagtggaaagagtggcaccctactgaatgtgcagtgttggaggatggtgag
tcaggtccaaaaaagtggttttgttctttcctgactacaatcacttcgtctgtttctaat
ggaaaataccaagccagatttcccatgaaatctttattacctaattcagcagaagtggta
tcctttagcatatatgacattactctctctttcttgaagttttggtatagcaaatgttct
ctgaagactatgccggaaactggcagtgaatcaccacgaagcttccttagttctttacct
gtggctgaagcatcatgcagttgtcagtgggagtgtctaaaagttctgtctagctcttca
ggttatttgatcggcttagttttgactcctaacgaatcagtaagttgtgaggcccatcca
tccaacgcagagtgcattttggttgctgttctggagctaaaccactggggtatacagtgg
aactttgtggcagaccttcaggatgcatgtgatggtattaggccaagttcaaaatgggtt
gattttcagttatcagatgtgtttcttacctgccttaatacagcaggttttgttgccatt
tggaacgtgaaaactggtggtcttgcgacatcattcagtgttcttcaacagtgcagaaca
gacctggagatgcctctgaggagctctatgcccattgtgacaaatttggatgggggaaat
atccctgttgagaactttgttggcagaatgtttaagcggttagttttggcatcatactct
tgtcttcttgctgttgtagatgaggttggagtagtgtatgtgttctatgcggatgacatc
ttaaacttcaaagctaatgtgcatgaaatcattgatctgcctgttatgaatcattttgct
gattgtttttctacctgggaagctgctggtcatgagataggaagtctatcattttgtact
aatcagtccatacgagggtcacttaatctagccaaattggttcctgagttctcagggaaa
accgatgttgttattgccaggcctagaaaaagaagaaagtatagatgcaatgaaaatgaa
gtggacagctggccaagtggctttgtcactacagggcagatgaaagttggggtagcttat
cctcacacaaattcctctagtttcttaaggaggataattcttcctccatgcagatcacag
caggatgtaattagcctgtctccacttggactaactaggatttttaaaggttctattacg
gatggaaatgagcatgtcaaaatttttcattccgagttgcttatgtattcatcttttctt
ggcaaaggagatattgatgttggtcttatggacaaaatgcttccatttcagaaggattct
gcttttgttggagattctgttgtttgctcctgccaggggtatctgtatttaattacccag
tatggtctttctgtggtccttcctccggtttctgtatcgtctttttcatctcatggtgac
accatcaaattttggcaaccgggttctgctactggtagtacatgcaatgctctgaactta
ttatctgttgacagatctgaaacaagctggaaaacctggcaaatagaagttctggataga
gcgttgttgtatgaagggcctgcactagcagacaggctttgttgggagaatggatgggat
ttgaaattctctaggttacggtggctgcaattggcccttcattactcaatgattggtgat
ctagagcagtcactgaatttgctcgctgaggtcaatcttgcagaagaaggtgtcttgcaa
ctactattggcatctattcatcggttatctagtaggactggaagtgataatgaagctgcg
gtgtcatccaagttaatggttttagctgtccgctttgcaacaagaatgataaaatgttat
gggctacaaaagcaaaacacagataataattcagtaaagcttcatgaaatggctctcctt
ttgatggtaataagaagtatccagagccgaatctctgcaaagaatcagaattctgttcgg
acgggagatgataagaactcattgaatataggtacagaagtatttcagaatgattctttg
cttccagttgttgtagtggatggtgtttcatcagggccatcaggtggtttagatgcttat
gacaggcaagagtcagctcctgtgttggttcctgatagcaacatcatgttagctctaaca
ccagttgagtcatctcttagtgcttcaactctccatgacattgatactaataaagggact
actcaagttggaagacaaattattcaaggaaatatcaaggagatgattaacagatgggaa
atgaataactttgactcgaaaactgtagtcagagaagcactgcagtctggtcgcctacct
ttggcagttcttcagttgcagcttttgcgccagagggaatttgtctccaatgatgattca
ggagatgctttctctgaagttcatgaaattggaagatccattgtgtatgatctgttgacg
aagggtgaaactggattggctgtagcaacactagaaaggctgggagatgatgtagagtca
gacctaagagaacttatgcaaggtactgtcaggaggtcactaaggctacaaattgctgac
gagatgaagaagcgtgggtacataagaccaaatgagtggaagatgctagaaactataaca
ctaattgagcggctctacccgagcagcagcttctgggacacatatttttgcagggagaat
gtcattcgtgatgctgcaaaaattgttacactgccaggagaagataaacctgtattggct
ctacatattcgcaaccaccccattattgaatgtggtgatgttgatggagcagtgcttggt
tcttgggtgaacattaatgattacactaaggagttctctggtagcaacgtttctgatggt
tattgggcctgtgctgctgtatggtcggatgcgtgggatcagagaactgtggaccgtata
ttgctggaccaaccttatcatatacatgctcatatcccatgggaatctcagtttgaatat
tttgttgctcataatgatgcggggaaagtctgcaacctcctggacatgattcccaatagc
atactttcagaagggattattagagtaaacgtggacagtttacaagccgctgccaacact
ctttctgatttaacactccctgattacaacatgtacatatgtgactcagaagagcttgaa
ccagtctgtatggagataccacatgttaaagtatttagatctttgtgcaatcatgaatca
acgttatatattcgaatggtaatgcagcaggaattggcaaagaaacacatctttatgaaa
gagtactggcaaagtactactgaaattatacctttgcttgctcgtgctggcatacttata
aaggttggttcaaaggaagaatgttctacgacatcttttgcttcagagatgccagatgat
gcccatcaccagggtcgtgaaggtgcactgcataagttaattatacgtttctgtgtgcaa
tataacttgccatatctactggacctctatctggacatctgtaatttggctcctgaaaag
gattcgtatccgttgctcaaagaaactgcaggtgattgcaagtgggcacaatggttgctc
ttctccaggatcaaaggtcatgagtatgaggcatcattctctaatgcctgttggaatttg
tcaaagaaaacggtcagtaatagtagtcttactgctgttgagatagatgaaatgttgtat
acagtagatgatatggctgaacgaattggtgaaatgtctgcactagctaccttgatgtat
gcttcagcaccaattcagaaatccatatgtactggaagtgtgaacagaagtggttcgtct
tcccagtgcacattggagaacctggctccttgtctccagcaatttccaacgctatggaaa
acccttttttcttcttgttttggccaagatgaatatgggtgtttaaactactctgctggt
aatgtgtttggaaaaagatcaatttcagagtacttgagatggcgctatagcattttttcc
tctgctggaggagacacttcgttgttgcaaatgcttccatgttgggtcccaaagtctatt
agaagattaattcaattatttgaacagggcccttttggaatgcaacttctatcaaatgtc
ccatcacctgaagagttattcactcacaatgtcaccgattatatatacaattccactgga
tatactgaagccagtgcattgtccttagaagcatcgatccaaaaaagtgtcgaagaagaa
ttatattcttcccttgaggagaaagatgtgagagtggaacaccatttgcaccgtggtcga
gccctagctgctttcaggcatcttattgctaagagggcttcacagttgaaatcagctagt
gcacgtcaagtgatatccgcacagtctaatgttcaagcagatgtacaattgatgcttgct
cctctaagtcaagctgaacgatcaattcttatatcggtggctccactagctattacaaac
tttgaggacttgactctagttgcttcctgtatattcttgttggaactttgtggtcactgt
gccaacatgcttcgtttagatattgctgcactacgacgcatctcttcctactataagtca
gttcgagaaaataaacatgctgatctatcttcacaaagggccccagagcttcatgtgcag
tcccatggagctggcatagctcctgctctagctcgagcactagctgaagattatgtccaa
tctgatcatctgcatgttttggagcagactcaaacctcaatggctcccaagaaggaacag
ccacaacatcctcttattgctattctgcagcaccttgaaaaagcaagtttgccatcgttg
gaggaagataaaacttgtggattttggcttttaactggtgttggtaatgcggctctttac
agatcgcaacagaatgaagcaagtcaacactggaatttggttactgaattctgtcaggca
caccatctcccactaagtacaaaatatcttgctttactggccaatgacaatgattgggtt
ggctttttaacagaagctcagatagctggatttcctattgaagttgttattgaagtggca
gccaaagagatcagggattcaagattgaggactcacatactgactgttctgaaaaatatg
atgtcacttagaaggaaagcatctggtaatataccttcaggaagcagttattcatctttc
tctgctgttgatggcaataatcccatggaacttttctgcattcttggagtctgtgaaaag
caaaaaaaccctggggaggcactcctgattaaagcaaaacaaatgcagtggtctttgctt
gccatgattgcttcatgctttccagatgtaactcctctctcatgcttaagtgtttggctt
gagattacagccgcaagggagatgtcgtcgatcaaggtggatgatgtttcttcgaaaata
gcaaagaatgttggatctgctgttgaggccacaaataaattgccaagttctggcagaaat
gttgaatttcgttacaacaggaagaatccaaagcgaagacggttcctggaagcctcacag
gaaaagctcacaatatgtttctcactagatagcacatgtgggccagattctgctgcaact
tccaatcctacaaatattgatgatcatcaggaaggaggaaagccaatctctgttgatatt
gatgaaaggcttgcatctttatcaaacatggtagcagtgctttgtgaacaacaactgttt
ctaccattacttagagcttttgaaatgtttttgccttcctgctcccttctttccttcatc
cgtactctccaggcattttctcaaatgcgtctgtccgaggcttctgcacatttggcatcg
ttttcaacaagaataaaagatgaagcctctcatactcaactaaactcttccaaagaagtg
tcagttatagcagaatgggtggccgttacagctgtaaaagctgcagatgctgtcctctca
acctgtccatcaatttatgagaagaggtgtttactgcagcttctttcagcagtggacttc
gccgatggtggcacttcatcatcttactttagccgaagatattggaagattaatctgtct
gaaccttctttgtgtaaagatggtgatatctacaactggaatgatttgatggatgatgct
tctcttttgacatcattagaaaaggacggtcaatgggagcaggctcgaacttgggcaaga
caactggagtcaagtggcatagcttgggagtctactcttgaccatgtcactgaatcacag
gcagaagccatggttgctgaatggaaggagtttctttgggatatcccacaagaacgtgca
gccttgtggggtcactgccaatctctctttatgagatattctttccctccttttaaggct
ggattatttttccttaagcatgccgaagcagtaggaaaagagataccagcacaagagctt
catgaaatactattgctctctctacaatggctaagtggaactatgactaaatcccctccg
gtctatcctcttcatcttttgcgggaaattgagactagggtgtggctcttggctgttgag
tcagagagtcaatctaaggctgatggtgaatttgcgacttctgctgttgctcaaaacata
gctgttggaaacagtagcagtattatagaacagactgctgatgtcatcacaaaaatagac
agtaatatgagctcgccgcacatgaaagttacagaaaggaatggcacacgggacagttta
tcaagccaacatgtgcaactctttgagtctaacagcgaagcatcttcaacaacaataaat
aacacgagagcaaagcgaagggtgaaaacaagttcaccacttagacgaggggccaatgac
aatattgaaagtagaactaacgagctggataacaattctaacagttttcatagttcaaag
attggagaacaacctagaaatttactttctgaagaggaatttgcaaaaatggaagcatct
ttatctggctgggaacaaaatgttaggcctgtagatatggagaaggctgtgctctcctta
ctggaatttgggcaaataactgctgctaagcaactccaacaaaagctgtctccatcatat
attcctgaagaacttgtccttgttgatgttgctttaagaattgccaatagcagcagtagt
ggagagatcagtctgttatgctttgacacacaggctctttcgatacttcagtcactggaa
gtagcaaatagctgcgatatgattagcccatcacaggttatggagatactagctgtgaaa
tgtggtgagggccgtgggcgagctcttattaggagaataatagcaattgttcgaactgct
aaattactgggactcccattttctgaagcatttgagaaacagccaattgaacttctacag
ttgctttccctgaaagcccaggattcttttgatgaagcgaaatttctggtggagacacac
atcatgcctgcatctagcattgccagaattatagcagattcgtttctaaaggggctttta
gccgcgcatcgtggaggctatttggattcccaaaaggaagagggtcctgcacctctattg
tggagatcaagtgacttcttaaagtgggcaaaactatgtccatcggaatcagaaattggc
catgctttgatgcgtttggtaatgactggacatgaagtaccacatgcttgcgaggttgaa
ctcctaatattgtcgcaccacttctacatgtcatcttcttgtcttgatggagtggatgtt
ctcgtcacatttgcagcaaatagagtggagtcatatgtttcagagggggatttttcttgt
ttagctcgcttgatcactggagtgagcaatttccattccttgagcttcattctttcaatc
cttgtagagaatggccaattggagttgctgcttcaaaagtactctgccactgacacagcc
acagggacgcctgcatcggttcgaggatttaggatggctgttattacatcactgaaacag
tttaacccgaatgatgatgatgctctctctatggtatacaagcactttgacatgaagcat
gaggctgcttctctccttgaattgcgtgcagagcaatacatgaacagctggttatctcga
tatgacaaggaacggcgaaatgatgagcttcttgaggctatgcatcaccttgtagagaca
gctgaggttctttcaactattgatgctggccaaagaacacatcgtgcttgtgcccgtgct
tctgttctgtcacttcagatccgaatacctgatcttatgtggattggtctttcggagacc
aatgcccggcgaatttttgtggaacaatctaggttccaggaagctcttattgttgctgaa
gcatacaacataaatcaacctatagaatgggctccagtcttttggaatcaaatgctaaag
ccggatctaatcgagcaattcgtggctgagtttgtatcagtgctgcccctgcagccacca
atgcttctcgagcttgcaaggttttacagggcggaggtggcagccaggggagagcaatca
cacttctctgtctggctttcacctggaggcttgcctgcagagtgggtgaaacatcttggc
agatcattcaggagcctgctgcgtagaacaagggacatgaggctgaggctgcagttggca
actctggcgacaggcttcattgatgtccttgacatttgcaatagagttttggataaagtc
ccggacaatgctggcccactgatcctaaggaagggccatggcggggcataccttcctctc
atgtaa
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integrated database retrieval system
