Miscanthus floridulus: 136516285
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Entry
136516285 CDS
T10264
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136516285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136516285
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136516285
mRNA degradation factors
5'-3' decay
Decapping complex
136516285
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
136516285
NCBI-ProteinID:
XP_066365744
LinkDB
All DBs
Position
17:complement(91155146..91161065)
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AA seq
801 aa
AA seq
DB search
MRGIRADGDGGGGGGGGPSSSSTAENSRFDAAQYSFFGKAPMQGAELGGLLDGGVDGDGG
GFGGPDDGSYQFSSTGEEIDCMSNLSEIDDLASTFAMLNRSISGTRNPGVIGDRRSISRE
SSLTADWAQDADFSNWVDQDILDSDESLDSKQWCSQLQSSPHFGESKPLSRTSSYPNQPL
QHRSSEPILLHRSTSFTSYPPPGGSPALPYPAQGLTRHSSIPSPGAGHHMGSPSSSLSGS
PYHMPGLSHGLPYGRSMSYTTGDLSMNNVLQNEWSNQAVPLAFDHLNRRPSLFLPQLSLP
SSSMSSLLFSQQHQRLPPGQPPLQNYINMQPHLFYHHQSPDVPSPRDKRSRSGRGKHNIR
FSQQPSDAGSQNSESSGIKFRSKYMSSEEIESILKMQHSANHSNDPYIDDYYHQACKAKR
SVTSQMSNFCPMSIKDFPSKSRSGVDQHSYLQVDANGGVSFSAIRRPRPLLEADLPGSGD
GFYDHKSSKRPLEKEPMLAARITVEDSLRLLLDVDDIDRFLQSSQPQDNSFQLKRRRQVL
LEGLATSLQLVDPFGPNKPGHSGGLAPKDDLIFLRIVSLPKGRKLLARYLRLVSGSELPR
IVCMAVFRHLRSLFGGLPSDSSAAETTIGLAKTVSSCVHHMELSALSACLAAVVCSSQQP
PLRPHGSAAGDGASLVIKSVLDRATELLADPHSAANYSRSARSLWQASFDAFFGLLTKYC
DSKYESIVQRFAMQGSSSMGGPETTKAVSREMPVELLRASLPHTSEQHRQTLLDFARKST
HVPGFSPNASRGHVNSESVPG
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgaggggcattagggcggatggcgacggcggcggtggcggaggcggaggcccgtcctcg
tcttccaccgcagagaactcgcggttcgacgcggcgcagtactccttcttcggcaaggcg
cccatgcagggagcggagctcggtgggcttttggatggaggtgtcgacggcgatggtggc
ggattcggtggacctgatgatggtagctaccagttctcttctacaggcgaagagattgat
tgtatgagtaacttgtcggaaattgatgatcttgcaagcacttttgcaatgttgaaccga
agtattagtggaacaaggaatcctggcgttattggtgatagacgatcaatttcgagagaa
agttctttgactgctgattgggctcaagatgctgacttctccaattgggtagatcaggat
atactagacagtgatgaatccctggacagcaaacaatggtgctcgcagctgcaatcttcg
cctcactttggagagtctaaaccactgtctcgtacatcttcatatcccaatcaaccacta
cagcaccgctcaagtgaacctattcttttacacagatctacttcgtttacgtcctatccg
ccaccaggtggaagtcctgcattgccttatcctgctcaaggtcttacacggcactcaagc
attccatcacctggtgctggtcaccacatgggttctccgagttcatcactttctggttcc
ccatatcatatgcctggtctatctcatggactgccttatggacgaagcatgtcttacacc
actggagatctgtcaatgaacaatgtcttacaaaatgagtggtcaaaccaagctgtccca
cttgcttttgatcatcttaaccggcggcctagtttatttctgccacagttatcccttcca
agtagttcaatgtcttcattgcttttttctcagcagcaccagagattaccaccaggccag
ccgcctcttcagaattacataaacatgcagcctcacctattctatcaccaccaatctcct
gatgttccttcaccaagagacaagcggtcaaggtcaggaagaggaaagcacaacatacgc
ttttctcaacagccttctgatgcaggtagccagaatagtgagagttcagggataaagttc
agatccaagtacatgtcatctgaagagattgaaagtatcttaaaaatgcagcactctgca
aatcacagcaacgatccttacatcgatgactactaccaccaagcttgcaaagccaaaaga
tctgtaacttctcagatgtccaatttctgccctatgtcaataaaggacttcccttcaaaa
tcccggtctggtgttgatcagcattcatatctacaggttgacgctaatggaggagtttca
ttctctgccatacgtagacctcgccctcttcttgaagctgatttgcctggatctggtgat
ggtttttatgatcataagtcgtccaaaaggccactggagaaagagccaatgcttgcagcc
agaataaccgttgaagattctcttcgtcttcttctggatgtcgatgatattgatcgtttt
ttacagtctagccagccacaggacaacagtttccaactgaagcgaaggcgacaggtcctg
cttgaaggcttagctacatcacttcagcttgttgacccttttggccccaacaaacctggc
cattcgggtgggttagcccctaaggatgacctaatttttcttcgtattgtttctctgccc
aaaggacgcaagcttttggcacgctaccttcgacttgtctctggaagtgagctgccccgg
atagtttgcatggctgttttccgacatcttaggagcttgtttgggggcttgccgtcagac
tctagtgctgcagaaacaaccattggtcttgccaagactgtttcctcttgtgtgcaccat
atggaactcagtgctctcagtgcctgccttgcagctgttgtctgttcatcgcagcagcca
cctctccgaccacatggtagtgctgctggtgatggggcctctctggtaatcaaatctgtg
ctggatagagcgaccgagctactggctgatcctcattccgcagctaactacagcagatca
gcacgttcactttggcaagcatcatttgatgccttctttggactgctgacaaagtactgt
gacagcaagtatgaaagtattgtgcagaggtttgccatgcagggatccagctccatggga
ggacctgaaaccaccaaagcagtcagcagggagatgcctgttgagctgttgcgtgcaagt
cttcctcatactagtgaacagcatcgtcagacactgctagattttgctcggaaatctacg
catgtacctggtttcagtcctaatgctagtcgtggacatgtcaattctgaatcagttcca
ggttaa
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