KEGG   Miscanthus floridulus: 136516285
Entry
136516285         CDS       T10264                                 
Name
(RefSeq) protein PAT1 homolog 1-like
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
mflo  Miscanthus floridulus
Pathway
mflo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    136516285
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mflo03019]
    136516285
Messenger RNA biogenesis [BR:mflo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     136516285
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     136516285
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 136516285
NCBI-ProteinID: XP_066365744
LinkDB
Position
17:complement(91155146..91161065)
AA seq 801 aa
MRGIRADGDGGGGGGGGPSSSSTAENSRFDAAQYSFFGKAPMQGAELGGLLDGGVDGDGG
GFGGPDDGSYQFSSTGEEIDCMSNLSEIDDLASTFAMLNRSISGTRNPGVIGDRRSISRE
SSLTADWAQDADFSNWVDQDILDSDESLDSKQWCSQLQSSPHFGESKPLSRTSSYPNQPL
QHRSSEPILLHRSTSFTSYPPPGGSPALPYPAQGLTRHSSIPSPGAGHHMGSPSSSLSGS
PYHMPGLSHGLPYGRSMSYTTGDLSMNNVLQNEWSNQAVPLAFDHLNRRPSLFLPQLSLP
SSSMSSLLFSQQHQRLPPGQPPLQNYINMQPHLFYHHQSPDVPSPRDKRSRSGRGKHNIR
FSQQPSDAGSQNSESSGIKFRSKYMSSEEIESILKMQHSANHSNDPYIDDYYHQACKAKR
SVTSQMSNFCPMSIKDFPSKSRSGVDQHSYLQVDANGGVSFSAIRRPRPLLEADLPGSGD
GFYDHKSSKRPLEKEPMLAARITVEDSLRLLLDVDDIDRFLQSSQPQDNSFQLKRRRQVL
LEGLATSLQLVDPFGPNKPGHSGGLAPKDDLIFLRIVSLPKGRKLLARYLRLVSGSELPR
IVCMAVFRHLRSLFGGLPSDSSAAETTIGLAKTVSSCVHHMELSALSACLAAVVCSSQQP
PLRPHGSAAGDGASLVIKSVLDRATELLADPHSAANYSRSARSLWQASFDAFFGLLTKYC
DSKYESIVQRFAMQGSSSMGGPETTKAVSREMPVELLRASLPHTSEQHRQTLLDFARKST
HVPGFSPNASRGHVNSESVPG
NT seq 2406 nt   +upstreamnt  +downstreamnt
atgaggggcattagggcggatggcgacggcggcggtggcggaggcggaggcccgtcctcg
tcttccaccgcagagaactcgcggttcgacgcggcgcagtactccttcttcggcaaggcg
cccatgcagggagcggagctcggtgggcttttggatggaggtgtcgacggcgatggtggc
ggattcggtggacctgatgatggtagctaccagttctcttctacaggcgaagagattgat
tgtatgagtaacttgtcggaaattgatgatcttgcaagcacttttgcaatgttgaaccga
agtattagtggaacaaggaatcctggcgttattggtgatagacgatcaatttcgagagaa
agttctttgactgctgattgggctcaagatgctgacttctccaattgggtagatcaggat
atactagacagtgatgaatccctggacagcaaacaatggtgctcgcagctgcaatcttcg
cctcactttggagagtctaaaccactgtctcgtacatcttcatatcccaatcaaccacta
cagcaccgctcaagtgaacctattcttttacacagatctacttcgtttacgtcctatccg
ccaccaggtggaagtcctgcattgccttatcctgctcaaggtcttacacggcactcaagc
attccatcacctggtgctggtcaccacatgggttctccgagttcatcactttctggttcc
ccatatcatatgcctggtctatctcatggactgccttatggacgaagcatgtcttacacc
actggagatctgtcaatgaacaatgtcttacaaaatgagtggtcaaaccaagctgtccca
cttgcttttgatcatcttaaccggcggcctagtttatttctgccacagttatcccttcca
agtagttcaatgtcttcattgcttttttctcagcagcaccagagattaccaccaggccag
ccgcctcttcagaattacataaacatgcagcctcacctattctatcaccaccaatctcct
gatgttccttcaccaagagacaagcggtcaaggtcaggaagaggaaagcacaacatacgc
ttttctcaacagccttctgatgcaggtagccagaatagtgagagttcagggataaagttc
agatccaagtacatgtcatctgaagagattgaaagtatcttaaaaatgcagcactctgca
aatcacagcaacgatccttacatcgatgactactaccaccaagcttgcaaagccaaaaga
tctgtaacttctcagatgtccaatttctgccctatgtcaataaaggacttcccttcaaaa
tcccggtctggtgttgatcagcattcatatctacaggttgacgctaatggaggagtttca
ttctctgccatacgtagacctcgccctcttcttgaagctgatttgcctggatctggtgat
ggtttttatgatcataagtcgtccaaaaggccactggagaaagagccaatgcttgcagcc
agaataaccgttgaagattctcttcgtcttcttctggatgtcgatgatattgatcgtttt
ttacagtctagccagccacaggacaacagtttccaactgaagcgaaggcgacaggtcctg
cttgaaggcttagctacatcacttcagcttgttgacccttttggccccaacaaacctggc
cattcgggtgggttagcccctaaggatgacctaatttttcttcgtattgtttctctgccc
aaaggacgcaagcttttggcacgctaccttcgacttgtctctggaagtgagctgccccgg
atagtttgcatggctgttttccgacatcttaggagcttgtttgggggcttgccgtcagac
tctagtgctgcagaaacaaccattggtcttgccaagactgtttcctcttgtgtgcaccat
atggaactcagtgctctcagtgcctgccttgcagctgttgtctgttcatcgcagcagcca
cctctccgaccacatggtagtgctgctggtgatggggcctctctggtaatcaaatctgtg
ctggatagagcgaccgagctactggctgatcctcattccgcagctaactacagcagatca
gcacgttcactttggcaagcatcatttgatgccttctttggactgctgacaaagtactgt
gacagcaagtatgaaagtattgtgcagaggtttgccatgcagggatccagctccatggga
ggacctgaaaccaccaaagcagtcagcagggagatgcctgttgagctgttgcgtgcaagt
cttcctcatactagtgaacagcatcgtcagacactgctagattttgctcggaaatctacg
catgtacctggtttcagtcctaatgctagtcgtggacatgtcaattctgaatcagttcca
ggttaa

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