Miscanthus floridulus: 136516540
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Entry
136516540 CDS
T10264
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136516540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136516540
Spliceosome [BR:
mflo03041
]
Complex B
Other components
Prp19-related factors
136516540
Complex C
136516540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_3
zf-CCCH_10
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
136516540
NCBI-ProteinID:
XP_066366053
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All DBs
Position
17:complement(12625955..12630767)
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AA seq
511 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRRARAGIDYDSSYGKARPNDTILKLQRTAPYYKRNRAHVCSFFVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDETIRTLYIGGLDSRIT
EQDLRDQFYAHGEIESIRMVLQRAIAFVTYTTREGAEKAAEELANKLVIKGMRLKLMWGK
PQAPKPEEDESGRQGQVSHGGLLPRAVLSQQQSGDQPQPPGMEGQQQQAAPASYYFNIPA
PPAAERTLYPSMDPQRMGAIVKSQDSEGKPGPQQAGQAQPSSSSAQGGYPAPPPYYHGQY
PPYYPPPPPYGGYMPPPRMPYHPQYPPYQPMLAQPAQGQASSSQQPPQAGAGQQPPHGRP
AQQQPPHGPPAQQQPPHGPPAQQQPQQPTQN
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggctcaccggctgctacgggacgcgcaggcggacgggtgggagcggtcggacttcccc
atcatctgcgagtcatgcctcggcgacaacccctacgtccggatgttaagagctgaatat
gacaaagaatgcaaaatttgtgcacgtccttttactgtcttccggtggcggcctggtcga
gatgcaaggtacaagaagactgagatctgccagacatgttgcaagctaaagaatgtctgc
caggtctgcctgctggatcttgaatatggtctgcctgttcaggtccgagatacagcactc
gctatcaattctaatgatgcaattccaaggagtgatgtcaatcgcgaatattttgcagaa
gagcatgataggagggccagagctggcatagactatgattcttcctatgggaaggctcgt
ccaaatgataccattctgaagcttcagaggacagcaccatattacaagaggaacagagct
catgtttgcagtttctttgtgcgtggcgaatgtacaagaggagctgagtgcccttatcgt
catgagatgcctgaaactggggagttatctcagcagaacattaaagatcgctactatgga
gttaatgatccagttgcactgaaacttttgagcaaggcaggtgagatgccatccctgaca
ccgccagatgatgagactataaggaccctctacattggtggactcgatagcagaataact
gagcaagatttgagggatcaattttatgctcatggtgagatcgagtccataaggatggta
cttcaacgtgcaatcgcatttgtgacatatactacaagagaaggcgcagagaaggctgca
gaggagcttgctaacaagctagtcatcaagggcatgcgcctgaagctgatgtggggcaag
cctcaggctccaaagcctgaggaggatgagtctgggaggcaggggcaggtttcccatgga
ggactgctccctagggctgtcttatctcagcagcagagcggtgaccaacctcaaccccct
gggatggagggccaacagcaacaggctgcaccagcatcgtactacttcaacattccagca
ccaccagcagcggagcggactctgtacccatccatggatccacagaggatgggtgctata
gtaaaatcacaggacagtgaaggcaaaccagggccgcagcaagccgggcaagctcagcca
tcaagcagctcagcacagggcggctatcctgcaccaccgccatactaccatggtcagtat
ccaccatactatccacctcccccaccatatggtggctacatgcctccaccgcgcatgccc
taccacccacaatatccaccttaccagccgatgctagcacaaccagcacagggacaggct
agttcatctcagcaaccaccgcaagcaggtgcaggacagcagccgcctcatggccgtcca
gctcagcagcagccacctcatggccctccagctcagcagcagccacctcatggccctcca
gctcagcagcagccgcaacagccaactcagaactga
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