Miscanthus floridulus: 136516974
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Entry
136516974 CDS
T10264
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136516974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136516974
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136516974
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136516974
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
136516974
U7-dependent histone pre-mRNA processing factors
136516974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF2594
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
136516974
NCBI-ProteinID:
XP_066366586
LinkDB
All DBs
Position
17:2905124..2908057
Genome browser
AA seq
697 aa
AA seq
DB search
MASSAAAPSGAPPAGKRPASSGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIH
PAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYK
LLLSDYVKVSKVSVEDMLYDENDIARSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAM
FMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIVREKRFTE
VIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQT
YINSMNERIRNQFAQSNPFHFKHIESLNSIDNLHDVGPSVVMASPGGLQSGLSRQLFDKW
CTDKKNACVFPGYVVEGTLAKTIINEPREVTLANGLTAPLHMSVHYISFSAHADFPQTSN
FLDELRPPNIILVHGEANEMSRLKQKLITQFDGSNTKIVSPKNCQSVEMYFTCEKMAKTI
GRLAEKVPEGGESSGGLLVKKGFTYQIMAPEDLRVFTQLSTANITQRIAVPYSGSFEVIK
YRLKQIYESVESATEESDVPALIVHERVTVRLDSESYVTLQWSSDPISDMVSDSVVAMIL
NIDREGPKVVPVEEAVKTKEETEKVAQKVVYALMASLFGDVKVAEEGKFVISVDGNVAHL
DGMSGDVECENATLKERIKTAFRRIQSAVRPIPLSAS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctccgccgcggcgccgagcggcgcgccaccagctgggaagcgcccggcctcc
agcggacgggagggagaccagatggtcatcacgccgctgggcgccggcagcgaggtcggc
cgttcctgcgtccacatgaccttcaagggccgcaccgtcctcttcgactgcggcatccac
ccggcgtactctggcatggcggcgctgccctacttcgacgagatcgatccatccaccata
gacgtcctcctcattacccactttcacttggaccatgccgcctcgctgccgtacttcctg
gagaagactacgttcaagggccgggtgtttatgacccacgccacaaaggctatttacaag
ctgctgctctcggattatgtcaaagtcagcaaagtgtccgtggaggatatgctgtatgat
gagaatgacattgcgcgctccatggataaaattgaggttatagatttccaccagacattg
gaagttaacgggatacgcttctggtgctacactgctggccatgtacttggtgccgccatg
ttcatggtggatattgctggcgtgcgcattctttacactggtgactactcccgtgaagaa
gaccgccacctacgagctgctgagctcccacagttctccccagacatttgcattattgag
tcgacctatggtgtacagcaacatcaaccccggattgttcgtgagaagcgctttactgag
gtcattcacaatactgtttcacaggggggtcgtgttcttatcccggcatttgcacttggt
agagcacaagaactgttacttatcctcgatgagtattggtccaaacacccagagctccat
aagattcctatctattacgcttcccctcttgccaagaggtgcatggctgtctaccagaca
tacataaactccatgaatgaaaggatacggaaccagtttgcacaatccaatcccttccat
ttcaagcacatcgagtccttgaatagcattgataatttacatgatgtgggtccttcagtg
gtgatggctagtccaggtggtcttcagagtggtctctctaggcagctttttgataagtgg
tgcacagataagaagaatgcctgtgtttttccaggttatgttgtggagggaacccttgca
aagaccattattaacgagccaagagaagtgacactagctaatgggctcactgctcctctt
catatgtcggtccactatatctctttttcagctcacgcagatttccctcagacaagcaat
tttttggacgaacttcggccaccaaatattattcttgtgcatggagaagcaaatgagatg
tcaaggcttaaacagaaacttattactcagtttgatggttcaaatacaaaaattgtgtct
cccaagaattgccaatcagtagagatgtatttcacttgtgagaaaatggccaagactatt
ggtaggctggcagaaaaagtaccagaaggtggagagtcttccggtggcttacttgtcaag
aagggattcacatatcagattatggcgcctgaagatctccgtgtcttcacacagttatca
acagctaacatcactcagcgcattgcagtcccttattctggttcttttgaagtcataaag
tacagactgaagcaaatatatgagagcgtggagtcagcaacagaagaatctgatgttcca
gcattgattgtgcatgaaagagtgacagttcgtctagattcagaaagttatgttacactg
cagtggtcatctgatcccatcagtgacatggtgtctgattctgtggtggctatgatcttg
aacattgatcgtgaaggtccaaaagttgttccggttgaagaagcagtgaagaccaaagaa
gagacggaaaaggttgctcaaaaggtggtctatgcccttatggcgtcactttttggtgat
gttaaagttgcagaggaagggaaatttgtcatatctgtagatggaaatgtggcgcacttg
gatgggatgagtggcgatgttgaatgtgaaaatgctacactgaaggaacggatcaagact
gcattccgtcgcatacagagcgccgtgagaccaatcccactttcagcctcttga
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