Miscanthus floridulus: 136517281
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Entry
136517281 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2a-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
mflo Miscanthus floridulus
Brite
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
136517281
microRNA pathway
RISC loading complex
136517281
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GFIT
Other DBs
NCBI-GeneID:
136517281
NCBI-ProteinID:
XP_066366953
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Position
1:50270204..50284918
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AA seq
1403 aa
AA seq
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MSRAAAGEVVMEEEEEDPPPPPCDPQTQARWYQLEALERALAGNTLVFLETGAGKTLIAV
LLLRRFAHRIRSAPPPSFAVFLVPTVVLVSQQARVIRAHTDLRVAQFYGEMGVDFWNADK
WRDMVDGAEVLVMTPQILLDNLRHSFFRLRDIPLLIFDECHRAIGNSPYACILKEFYHPQ
LNSRPSDPIPTIFGMTASLIATGLARVKYSEKISELENLMNAKVYTVASESALLQYIPFA
TTKIVEYDDYIITSEFYSHTIRCLNKLEKKHLETLKEKLHGSLLENSEKKIKKLNAMFLY
CISDLGVWLAAKAAEILQSNKEICVSFWGEKLDEKVEGFIRNYVRDVYSDLSEIILKMTK
RGVQRHIGEDFTEDLQDGLLTSKVYFLIKSLLGYRHMQDLRCIVFVDRVITSIVLEALLS
TINQMSGWSVRYMASGRIGGLQHQSRNKHVEIVDSFRSGKVQVVIATSILEEGLDVPSCN
LIIRFDQAATVCSFIQSRGRARMQNSDYVLLIRRGDANALYKTEKFLESGQIMREESQRL
ESTCCQPLPNTLCNKEFYRVQSTGAIVTLNSSVALIYLFCAKLPSDEYFKPVPRFNINKA
LGTCTLHLPMSSPVQTIYAEGEVSMIKKVVCLKACRELHAVGALTDSLLPESSVPCEDEP
DIVVDKYKNGQPDYFPEQLVDNWLSFSRRGFYYCYMISLEGCSETTPAEIVLAVKCDMGS
HFISNSFKLWGVQDDLSFTMRYVGIIHLNQEQVIAARRFQTTILSLLISNDLSEVSNSIK
NLLEMPVSPGAVYLLLPVVSGKIDWCSIKFSASEMPEATNMDMRHCHPCKDTGIVQSLQT
KDGPFCRCMLRNSIVCTPHNSMFYAVSGFRLDLDANSLMPESSLSYKTHFKERHGLDLTC
EDQPLLKACKLVEVRNFLHKCNYKKEKERSRKNAVELPPELCIVVMSPMSAITLRSFTFI
PSIMYRIQCMLLSMNLKMQLGPSMQQFDIPALKILEALTAKNCEEEFSQESLETLGDSFL
KYITTQHLFGKYRHQHEGMLTKMKKNLISNAALCQLACSNNLVGYIRSEAFNPKTWIVPG
VGYDICGTSLRKXKSKRIADSVEALIGAYLCAAGEQAAYIFLKSLGMDIEFNKMPVERII
TIKPEEFVNVKSLELLLDYRFNDPSLLMEALTHGSYQIAGTTACYQRLEFLGDAVLDHIF
TDYFYHQYPECTPERLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKF
EQSFSGPSHGWEAGISLPKVLGDVVESIAGAIYIDVKHDKEIVWRSMKRLLEPLVTPDTL
ENDPVKELQEFCDRKAYTMEYTVTRENGVSSVVAEVRAEGTTYRATRTGFSKLDAKKLAA
SSVLHDVKVADRTQYSANGISNT
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcgccgccgccggggaggtggtgatggaggaagaagaagaagatccgccgccg
ccgccctgcgacccgcagacgcaggcgagatggtaccagctcgaggcgctggagcgcgcg
ctggccgggaacacgctggtgttcctcgagacgggcgccgggaagacgctcatcgcggtg
ctgctcctccgccgcttcgcgcaccgcatccgctccgccccgccgccctccttcgccgtc
ttcctcgtccccaccgtcgtgcttgtgagccagcaggcgcgcgtcatccgggcgcacacg
gacctccgcgtcgcccagttctacggcgagatgggcgtcgacttctggaacgcggacaaa
tggcgcgacatggtcgacggggccgaggtgctcgtcatgacgccgcagatcctcctcgac
aacctccgccacagcttcttcaggctccgggacatcccgctcctcatcttcgacgagtgc
caccgcgccatcgggaattccccgtacgcctgcattcttaaggagttttatcatccgcaa
ttgaattctaggccatcagatcctattccaactatatttgggatgacagcttctctaatt
gcaacaggtttggcgcgtgtcaaatattcagagaaaatatctgagctcgagaatctcatg
aatgcgaaggtgtacactgttgccagtgaatcagcactattgcaatacattccatttgcg
actacaaagatagttgagtatgatgattatatcataacgtctgagttctatagccatact
atccgttgcttgaacaaattggaaaagaagcatttagaaaccctgaaggagaaactgcat
ggttcacttctggaaaattcagagaaaaagataaaaaaactaaatgcaatgttcttatat
tgcatatctgatcttggagtatggctggcagcaaaggctgctgagattctacaatcaaac
aaggaaatctgtgtgtccttttggggcgaaaaactggatgaaaaagttgaaggattcatt
agaaactatgtcagagatgtgtatagtgatctctcagaaattatattgaagatgacaaag
aggggcgtacaacgacatattggtgaggacttcactgaggatctgcaagatgggttattg
acatccaaagtttattttcttatcaaatctcttctggggtataggcatatgcaagatttg
aggtgcattgtttttgttgacagagtcattacaagcattgtgttggaggctcttctgtca
actattaatcaaatgtctggatggagtgttagatacatggcatctgggagaattggtggt
ttgcaacatcagagtaggaataagcatgtggaaatcgttgattcatttcggagtggaaag
gtgcaagtggttattgctacatcaatcttggaggagggactggatgtgccaagttgtaac
ttgataatccgttttgatcaggcagcaactgtatgcagctttatacagtcacgtggtcgt
gctaggatgcaaaattctgactatgttttacttattagaaggggagatgccaatgctctt
tataagacagagaagtttctcgaaagtggacaaatcatgcgtgaagaatctcagagattg
gaatctacttgttgtcagcctcttcccaacactctatgcaataaggaattttatcgtgtt
caatctactggagcaattgtgactctgaactctagtgttgcattgatttaccttttctgc
gcaaagctaccatcggatgagtattttaaacctgtaccaagattcaatattaacaaggca
ttaggtacatgtacgctgcatcttccaatgagcagtcctgtacaaacaatttatgctgaa
ggagaagtttctatgatcaagaaggttgtttgtctcaaggcctgccgggaattacatgct
gttggcgctctcacagattctctcttgcccgaatcgagcgttccatgtgaagatgaacct
gacattgttgtggacaaatacaaaaatgggcaacctgactactttccagagcaattagtg
gataattggttgtctttttctcgtcgtggcttttactattgctacatgatctcactggaa
ggttgttctgaaactactccagctgagatagtattagctgtgaagtgcgatatgggatct
cacttcatctcgaactcattcaaactgtggggtgtgcaagatgatttgagttttaccatg
agatacgttggtatcattcatctcaaccaggaacaggtaattgccgcgagaagatttcag
acaacgattctttctttgcttattagtaatgacctttcggaggtcagcaattctattaag
aacttacttgaaatgccagtatctcctggagctgtgtatctacttctgccagtggtttct
ggaaaaattgattggtgcagcatcaaattctcagcctcagaaatgcctgaagctactaac
atggatatgagacactgccatccttgtaaagatactggtatagtgcagagtctgcagaca
aaagatggccctttctgccggtgcatgcttcgaaattctattgtctgtaccccacataat
agcatgttttatgctgtttctggctttcgtcttgacttggatgctaattcgcttatgcct
gagagttctcttagctacaaaacccattttaaggaaaggcatggccttgatttaacatgt
gaagatcaacctctcttgaaggcctgtaaacttgtggaagtgcggaacttcctccacaag
tgtaactataaaaaagaaaaagaaagaagccgtaagaatgcggttgaattgccacccgaa
ctgtgcatagttgtcatgtcgccgatgtcagcaattactttgcgcagcttcacgtttatt
ccttctataatgtaccgtatccaatgtatgcttctttctatgaatttgaaaatgcaattg
ggtccgagcatgcagcagtttgacattccagcactaaagattctggaagcacttacagca
aagaattgcgaagaggagttttcacaggagtcattagaaacacttggggactcttttctc
aagtatattacaactcaacacctttttggcaaatacagacatcagcatgaaggcatgcta
accaagatgaagaaaaacttgatctcgaatgcagctttatgccagctggcctgcagtaac
aatcttgtgggatacattcgaagcgaagctttcaaccctaaaacgtggattgttcccggg
gttggctatgacatatgtggtacgagtttgaggaagnctaaaagtaagagaatcgcggat
tcagttgaggcattaattggggcgtatctttgtgctgctggtgagcaggcagcatatatt
ttcttaaaatctttaggaatggatatagagtttaacaaaatgccagttgaaaggataatc
acaatcaaaccagaagagtttgttaacgttaaaagtttggagctactgcttgactatagg
ttcaatgatccttcattgttgatggaagcactgacacatggttcatatcagattgctggc
actactgcatgttatcagcggctcgagtttcttggagatgctgtattagatcatattttt
actgattatttctaccatcagtaccctgaatgcactccagaacggttgacagatctgaga
tctgcttctgtgaacaatagctgctatgctcatgcagcggtaaaagcgggattacataag
catgttcttcactcgtcatcagcactgcacaaaaggatggctgactacctcgacaagttt
gagcagtcattttcaggtccatcacatggttgggaagcaggcatcagtctacccaaggtt
ctaggtgatgtagttgaatctatcgctggtgcaatttacattgatgtcaagcatgacaaa
gaaattgtttggagaagcatgaaacggctactggaacctcttgtcacccccgacactctt
gagaatgatcctgtgaaagagctccaggaattttgtgatcgcaaagcttacactatggag
tacacggtaactcgtgagaacggggtatcctcggtggtcgcagaagtgcgggctgaaggg
actacatacagggccactcggacaggcttctctaagcttgacgccaaaaagttggcggcc
agttccgtgctccatgatgtgaaggttgcggatagaacgcagtattctgcaaatggtatc
agcaacacttaa
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