KEGG   Miscanthus floridulus: 136517343
Entry
136517343         CDS       T10264                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like isoform X1
  KO
K14962  COMPASS component SWD2
Organism
mflo  Miscanthus floridulus
Pathway
mflo03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    136517343
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mflo03019]
    136517343
   03036 Chromosome and associated proteins [BR:mflo03036]
    136517343
Messenger RNA biogenesis [BR:mflo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     136517343
Chromosome and associated proteins [BR:mflo03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     136517343
    COMPASS/SET1 complex (yeast)
     136517343
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR3_2nd ANAPC4_WD40 WDR55 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_Aladin WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_NOL10_N eIF2A TRM82_WD Beta-prop_ACSF4 Tricorn_2nd WD40_RFWD3 WD_LRWD1 PAC11 Beta-prop_VPS8 BCAS3_WD40 Beta-prop_NWD2_C Beta-prop_IFT122_2nd PD40 DUF6406
Other DBs
NCBI-GeneID: 136517343
NCBI-ProteinID: XP_066366988
LinkDB
Position
17:101381890..101384722
AA seq 318 aa
MAAALPQLDDEIVRGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSDDDSIRLYNITSATL
LKTTYHRKHGADRVCFSHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVS
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFS
LEPSPNVTNEAAFTPDGQYVISGSGDGTLHAWNINTVQEIACWNSHIGPMTALKWAPRRA
MFATASTALTFWIPNQSN
NT seq 957 nt   +upstreamnt  +downstreamnt
atggcggcggcgttgccgcagctggacgacgagatcgtccgcggcatggccatcggcgct
gtcttcaccgactatgccgggaagataaactgcctcgacttccaccgcaaggaagatctc
ctggtcacctccagtgacgacgactccatccgcctatacaacatcaccagcgcgacgttg
ttaaagaccacatatcacaggaaacatggtgctgaccgtgtctgttttagtcatcatcca
agttctatcttatgctcttcacgatacaacctagagtctgcagagtcacttcgttatctg
tcattgtatgacaaccgttgcttaagatacttcaaagggcacaaagacagggtcgtttca
ttatgtatgtcacctgtcaatgatagctttatgtcaggatcacttgatcacagtgtcaga
atatgggatcttcgcgtaaatgcttgtcagggcatactaaggctacgtggtagaccttct
gttgcatatgatcagcagggacttgtttttgctgtagcaatggaagggggtgctattaag
ttatttgattcccgatcgtatgacaagggtccgtttgacactttcttggttggtggagat
acagctgaagtttctgacatcaaatttagcaacgatggcaagtctatgcttttgacaaca
actaacaaccatatatatgttctggatgcatatggaggggataagaggtgtggctttagt
ttagagccatctcccaatgtaacaaatgaagctgctttcactccagatggtcaatatgta
atttcaggatcaggtgatggaaccctgcatgcttggaacatcaatacagtacaagagatt
gcttgttggaacagtcacattggtcctatgacagcattgaagtgggcccctcgtcgagca
atgtttgcaactgcatcaactgccctaactttctggattcccaaccaatcgaattag

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