Miscanthus floridulus: 136518274
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Entry
136518274 CDS
T10264
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136518274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136518274
03012 Translation factors [BR:
mflo03012
]
136518274
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136518274
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136518274
Translation factors [BR:
mflo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
136518274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
ABC_tran
AAA_16
AAA_23
NACHT
ATPase_2
Myosin_head
Motif
Other DBs
NCBI-GeneID:
136518274
NCBI-ProteinID:
XP_066368010
LinkDB
All DBs
Position
2:16527119..16533544
Genome browser
AA seq
1152 aa
AA seq
DB search
MRRGLRRGLGILLVPLPHAPSRPPPISLAALLLLPRRLNGFSRHSFCSFPGVGRAVEQFS
DDEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNVEEQEIISRDRRDRRDYDQIANLAKRM
GLYSEMYGRVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPLD
KCGGNTKSGSEMAENANLDEQHDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGAKMLE
FRRSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNIICT
QPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSDRNL
NGVTHVFVDEIHERGMNEDFLLIVLKELLSRRRDLRLILMSATLNAELFSSYFGGAPTIH
IPGFTHPVRAHFLEDILERSGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVEE
ALKNSSFETYGSRTRDSLVNWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDITCL
KDQLKAHPLLGDPNRVLLLACHGSMATSEQRLIFEKPPPNVRKVVLATNMAEASITINDI
VFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAF
ADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPAPLAVENAVEFLKMIGALDGN
ENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSVRDPFLLPQEKKDLAGT
AKSRFSAKDYSDHMALIRAYEGWKDAEREGSAYEYCWRNFLSSQTLQAIHSLRKQFSYIL
KDSGLIDSDGNTNNSLSHNQSLVRGIICSGLFPGIASVVHRENSMSFKTMDDGQVLLYVN
SVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILFLFGGAVTKGGMAGHLKMLDGY
IDFFMDPSLSECYLQLKEELDKLIQKKLEDPNFDIHKEGKYILFAVQELVAGDLCEGRFV
FGRETSRARLRNPEDDGKSNIIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAMV
EFKGMQFVGKPKRNKQLAERDAAIEALGWLTQTSGVKTQDEDDDDSPLDLTDSMLKLLTR
PRRHSKNNSRKR
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggcctgcgccgcgggttgggcatcctcctcgtcccactcccgcacgcaccc
agccgcccgccgccgatctctctcgcggctctccttctcctcccccgccgcctcaatggc
ttctcccgccactccttttgcagcttccccggcgtggggcgtgccgttgagcagttctca
gacgacgagtatgaccacgagtatgaggacctccggccgtcgtcatcggtggcgaacatc
gacgagtggaggtggaagctgagcatgcttcagcgcaacgtggaggagcaggagatcatc
tccagggaccggagggaccgccgggattatgaccagatagccaacctagccaagaggatg
gggctctacagtgagatgtacgggcgggttgtggttgcgagcaaggtaccactgccgaac
tacaggcctgatctggatgacaagcggccacaaagagaggtggtgatcccgctgagcttg
cagaggagagttgaaggacttgtgcaggagcatctagaccgtgcactcttaccactggat
aaatgtggtggcaacacaaaaagtggctctgagatggctgagaatgcaaacctggatgag
cagcatgattctctgcttgatcggtcagtcatggagaagatacttcagaggaagagcatt
cggatgcgaaattttcagagaagttggcaggaatcacctgaaggtgctaagatgctggaa
ttccggagatcacttccagcatacaaagaaaaagaaaggcttctagcagccattgcacgc
aatcaggttattgtaatttctggtgagacagggtgtggtaaaacgacacagctgcctcag
tttgtattggaatcagagattgagtctggtcgaggggccttttgtaatataatttgtaca
cagccacgaagaatatctgcaatggcagttgcagaaagggtatccacagagagaggagaa
aatcttggcgaatcggttggctataaagtccgattggagggaattaagggaaaagataca
catttgcttttctgcaccagtggcatcttactaagacgattactgagtgaccgaaacttg
aatggtgtgactcatgtgtttgttgatgaaatacacgaaaggggcatgaatgaagatttc
ctattgattgtactaaaagagctgttatcacggcgccgtgatttgaggttgatattgatg
agcgctactctaaatgcggaactcttctcaagttattttggaggagcaccaactattcat
attcctggattcacacatccagtaagggcacattttttggaagacatattagagaggtca
ggctacaagttgacctcaagcaatcaacttgatgattatgggcaagataaagtctggaaa
actcagagacagctattgcctagaaaaaggaaaaatcaaattactacacttgttgaggaa
gcccttaaaaattcaagctttgagacctatggttccaggacacgtgattctctagtgaat
tggaatcctgattgcattggtttcaacctcatagaggctgttctgtgccacatatgtcgc
aaagagcgacctggtgctgttttagttttcatgactggatgggacgatattacttgcttg
aaggatcaactgaaagcacaccctttgttaggtgatccaaatagggttttgctgcttgca
tgccatggttctatggctacttctgagcagaggctaatttttgagaagccacctcctaat
gttcggaaggtagtccttgccacaaatatggcagaagcaagtattacaataaatgatatc
gtttttgtcgttgattgtggtaaagcaaaggaaaccacatatgatgctctaaacaatact
ccctgcttactcccctcatggatttcgaaagcttctgcccgtcagaggaggggtagagct
ggccgtgtgcaacctggagaatgctaccatctgtaccctagatgtgtgtatgatgcattt
gcagactatcagcttccagagcttcttagaactcctttgaattcattatgtctgcagata
aaaagtttgcaagtcggcagcattggggagttcctatcagctgctctacagcctccagca
ccactagctgtcgaaaatgcagtggaattcctgaagatgattggagcattagatggaaat
gagaaccttactgatcttggacgatacctttccatgcttccagttgatccaaaattggga
aagatgcttataatgggtgcagtttttcggtgcatagatcctatacttactgtagttgct
ggactgagtgttcgggatcctttcctgttgccacaggaaaagaaggatttggcaggaaca
gcaaaatctagattctcagcaaaagattatagtgatcatatggccctcattcgggcttat
gaaggatggaaggatgcagagagagaagggtctgcttatgaatactgctggagaaatttc
ctttcttctcaaacactacaagccattcactctcttcggaagcaattcagctatatttta
aaggattccggtttgatagactctgatgggaatacaaataacagtttgagccataatcaa
tcattggtccgcggtattatatgttctgggctttttcctgggatagcatctgttgtgcat
agagaaaactccatgtcctttaagaccatggatgacggccaagttcttctttatgttaat
tcagtgaatgcaaaatatcagaccatcccatatccatggctggtctttggtgagaaggtg
aaggtgaatgctgtcttcatccgtgattcaactggagtatcagactccatactctttctg
tttggtggtgctgtaacaaaaggaggcatggctgggcacttgaagatgctcgatggctac
attgatttctttatggatcccagcctatctgaatgctacctgcaactaaaagaagaactt
gataaacttatacagaagaagcttgaagacccaaattttgacatccacaaggaaggcaag
tacatcctattcgccgtacaagagctcgtcgctggtgacctatgcgaagggaggttcgtg
tttggccgcgaaacaagccgtgccaggctccggaaccctgaggacgacggcaagagcaac
atcataaaggacgggatgaaccccaagagcctgctgcagacgctgctgatgcgggccggc
cacaccccacccaagtacaagacgaagcacctcaagacgaacgagttcagggccatggtg
gagttcaaggggatgcagttcgtggggaagccgaagcggaacaagcagcttgcagagcgg
gacgccgccatcgaggcgctggggtggctgacgcagacgtccggcgtgaagacgcaggac
gaggacgacgatgactcgccgctggacctgactgatagcatgctgaagctgctcaccagg
ccgaggcggcactcgaagaataattctagaaaacgatga
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