Miscanthus floridulus: 136518388
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Entry
136518388 CDS
T10264
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136518388
09123 Folding, sorting and degradation
03018 RNA degradation
136518388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136518388
03041 Spliceosome [BR:
mflo03041
]
136518388
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136518388
mRNA degradation factors
5'-3' decay
Lsm complex
136518388
Spliceosome [BR:
mflo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
136518388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
136518388
NCBI-ProteinID:
XP_066368135
LinkDB
All DBs
Position
17:65068223..65070405
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AA seq
88 aa
AA seq
DB search
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVIEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDV
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagaataacccctcccagctcctcccctcagagctgatcgaccggtgcatcggg
tccaagatctgggtgatcatgaagggggacaaggagctcgttggcaccctctgcggcttt
gatgtctacgtcaatatggtgctggaggacgtcatcgagtatgaatacactgctgaaggg
cgccgcattacaaagctcgaccagatcctcctgaacggcaacaacatagccattttagtt
cctggtggttcaccacccgatgtgtaa
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