Miscanthus floridulus: 136518879
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Entry
136518879 CDS
T10264
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like isoform X1
KO
K07466
replication factor A1
Organism
mflo Miscanthus floridulus
Pathway
mflo03030
DNA replication
mflo03420
Nucleotide excision repair
mflo03430
Mismatch repair
mflo03440
Homologous recombination
mflo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136518879
03420 Nucleotide excision repair
136518879
03430 Mismatch repair
136518879
03440 Homologous recombination
136518879
03460 Fanconi anemia pathway
136518879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mflo03000
]
136518879
03032 DNA replication proteins [BR:
mflo03032
]
136518879
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136518879
Transcription factors [BR:
mflo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
136518879
DNA replication proteins [BR:
mflo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
136518879
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
136518879
MMR (mismatch excision repair)
136518879
DSBR (double strand breaks repair)
HR (homologous recombination)
136518879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-CCHC
zf-CCHC_2
BRCA-2_OB1
RMI1_C
Motif
Other DBs
NCBI-GeneID:
136518879
NCBI-ProteinID:
XP_066368673
LinkDB
All DBs
Position
17:10016334..10023708
Genome browser
AA seq
918 aa
AA seq
DB search
MGGGGGEVMEVPLSTGALEAMWREDGLRPVLQLADAPQMAGGGPASEAGRYRVALCDGGA
RLHPGMLAASLNHLVARGALRRGTVIRVLEYLTGFSRTQRVIIVIQLEILHAECMLIRSP
TIFEANASQHIGVSCSGGLAIHEPCFMPCTQQVISNSSCSPDKGVLDSSVTPRAEPTVIN
LPFSECFCSMPAQSTVEAKMQQLSLNDHQNQRFMKTATGLSGTMAAWLTPGAVVAVSEHG
DGNGTLQPVLQVVDVRMVKNVENPSAECFRMVLSDGVYTMQSMLATAKNTRVRDGSIQKG
SIIHLQEFTCSTIQNRRFIIVSKLYVLQSECNIMGNPKPYEMRNQPNEQVTNLLANAAQA
NTGITPVSALNPYQTIWKIKARVTAKTDLRHYNSSRGPGNVFSFDLLDGQGGEIRATCFN
AQADQFFDLIEVDKVYLISKGSVKPAQKKFNSLNHEYEITLDFKTSIEVCIDDDSNIPRQ
QYNFRQISEIENIEAGAIVDLVGIVTSVGPSAMIIRKDGSEAQKRTLQLKDMSVRSMEII
LWGKFCDAEGHQLQLLCDSDSNPILSLKGGRVSDFSGRSVVTISSTQLKVNPDFPVAERL
KQWYITEGKNTACISLSRGISNMSGNHVLKTIAQIKDENLGRSDKPDFITVRAVLSHVGA
DKFCYQACSLELNGKQCCSLDLNGKRCYKKVMRNGDGTWYCDKCNQRTENCEYRYMLSCQ
IKDHTGTTYVTAFQEAGEAIFGHTAQELFMIRNVEQDDLRFTEIMQAVLRREYLFKLKID
EQTYKREQRVKCTIIGVKKLEETNNLLKDVSRPVLKDDSSYTPNVGSANLEARQSMLTSS
NANLQLDRASYSSSMLASSNVGATGFAQSNWMPTPPSASSDGCDFNGGFGFLDQSAVRGA
PLCFKCNQPGHWFKDCLV
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaggagggggggaagtgatggaggtgcccctgtcgacgggggcgttggaggcg
atgtggcgggaggatgggctgcgcccggtgctgcagctggcggacgcgccgcagatggcc
ggcggcggcccggcttcggaggctgggcggtaccgcgtcgcgctctgcgacggcggcgcg
cgcctgcatccggggatgctcgccgcgtccctcaaccacctcgtcgcccgcggcgcgctc
cgccgcggcaccgtcatccgcgtcctcgagtacttaaccggcttcagccgcacgcaaagg
gtcattattgttatccaacttgagatactgcacgctgagtgcatgctaatccgcagtccc
acaatctttgaggccaatgcaagtcaacatattggtgtatcctgttctggtggtcttgcc
atccatgaaccttgcttcatgccatgtactcagcaggttattagcaactcgtcatgttct
cctgataagggagtgttggattcttcagttacaccaagggcagaacctactgtgattaat
ctgccattcagtgaatgtttttgttcaatgccagcacagagcacagtagaagccaagatg
cagcagctttcattgaatgatcatcaaaaccaaaggtttatgaagactgccacagggctc
tcaggcacgatggcggcgtggctgacgcccggcgcggtggtggcggtctccgagcacggc
gacggcaatgggacgctgcagccggtgctgcaggtggtggacgtgcggatggtaaaaaac
gtcgagaacccctccgccgagtgcttccggatggtgctctccgatggcgtctacacgatg
cagtccatgcttgccaccgccaagaacacgcgcgtccgggacggctccatccagaagggc
tcaattatccacctccaggagttcacctgcagcaccatccagaaccgcaggttcattatt
gttagcaaactttatgttctgcaaagtgagtgcaacataatgggaaaccccaaaccctat
gagatgaggaaccaacctaatgagcaggtcaccaacttactggccaatgctgctcaagct
aatactggcattacccctgttagtgctttgaacccataccaaactatatggaagatcaag
gctagggtgactgcaaagactgatctgaggcactacaacagctccagaggtcccggaaat
gtcttctcctttgatctccttgatggacagggtggagaaatccgtgcaacatgcttcaat
gcgcaggctgatcagtttttcgacctcattgaggttgataaggtgtacctgatatctaaa
gggtcggtgaaaccagcacagaagaagttcaactctttgaatcatgagtatgaaataact
ctggatttcaaaacatctattgaagtctgcattgatgatgatagcaacatccctaggcag
cagtataatttccggcagataagcgaaattgagaacattgaggcaggtgctattgtggat
ttggttgggattgttacatcagttggtccttctgccatgataatccgaaaggatggctca
gaagcccagaaaagaactcttcaactgaaagacatgtctgttcggagcatggaaataatc
ctttggggcaaattctgtgatgcagagggacatcaactgcagttgctgtgtgattcagat
tcaaaccctatactgtctctcaaaggtggacgtgttagtgatttcagtggtagatctgtg
gtcacaatcagctcaactcagttaaaagtaaacccagattttccagtggctgaaaggctg
aagcagtggtacataactgaaggaaagaatactgcttgcatttctttgtctcggggaata
tcaaacatgagcgggaatcatgtgctgaaaacaattgcacagatcaaggatgagaacctg
gggcgatcagataagcctgacttcatcactgttagggctgtactctcacatgtgggagct
gataaattctgttatcaagcttgttccttggagcttaatggtaagcaatgttgttccttg
gatcttaatggtaagcgatgctacaaaaaggtgatgagaaatggtgatgggacatggtat
tgtgataaatgcaatcagcgcactgaaaattgtgagtacaggtacatgctttcgtgtcag
atcaaggatcacactggtactacttacgttactgcattccaagaggctggtgaagcaata
tttggccacacggcgcaagagcttttcatgatacgaaatgtagaacaagatgacctgaga
ttcacagaaatcatgcaggcggtccttcggcgtgaatacctattcaagctgaaaatcgat
gagcaaacctataaacgtgagcagcgtgtgaaatgcaccatcattggtgtcaagaagctg
gaagagaccaacaaccttttgaaggatgtttcgcgcccagttctgaaggatgattcgtcc
tacaccccaaacgttggctctgccaatttggaagctagacagagcatgctaacctccagc
aatgctaacctccagctagacagagcaagctacagctccagcatgctagcctccagcaat
gtgggtgccacaggctttgcacagtcgaactggatgcctactccaccatcagcttcatcc
gatggttgtgatttcaatggtggctttggctttttggatcagtcggcagtgaggggagcc
ccactgtgcttcaaatgcaaccagcctgggcactggtttaaggactgccttgtctga
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