Miscanthus floridulus: 136519740
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Entry
136519740 CDS
T10264
Name
(RefSeq) vacuolar sorting protein 39-like isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
mflo Miscanthus floridulus
Pathway
mflo04142
Lysosome biogenesis
mflo04145
Phagocytosis
mflo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
136519740
04142 Lysosome biogenesis
136519740
04148 Efferocytosis
136519740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mflo04131
]
136519740
Membrane trafficking [BR:
mflo04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
136519740
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_WDR35
zf-HC5HC2H
Baseplate_J_M_2
DUF8532
Motif
Other DBs
NCBI-GeneID:
136519740
NCBI-ProteinID:
XP_066369210
LinkDB
All DBs
Position
2:22326918..22348519
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AA seq
996 aa
AA seq
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MVHSAYDAVELVADVPGHIEAVASHAGKLLVAVSDTEGFLWGSDCSLRIYSAPSPSSDGG
GEIRWDGPYALERQEPRFWRRPPLAMEVSASSDLLISLSEWVALHRLPGLETVAVVSSKT
KGANVFAWDERRGFLAVGRQKRLTVFRLDSGREFVEVKEFGVPDILKSMAWCGDNICLGI
RREYMIINSMTGALTEVFSSGRIAPPLVVPLPTGELILGKDNIGVFVYQNGKLIQDSRII
WSDTPASVVIHRPYAVARLPRHVEIRSLRAPNALVQTVVLRDVQKLVQTDNCILAALSNS
VHGLLPVPIGAQIVQLTASGEFDEALALCKLLPPEDSNLRAAKESSIHIRYGHFLFDSGS
YEEAMEQFSDSHVDITYVLSLYPSIVLPQTNIIGEHDKLLDMPELARESSDVTDEMESYS
LQLHESDDKSPLEVKKMSHNALAALVKYLQKKRSGIIERATAEVTEEVVSGAVHHSLKLS
EPYKPKKLSKKRAQTHTSSIAREMATVLDTSLLQALILTGQSSGAIELLKGLNYCDLKIC
EEFLKERSEYMVLLELYKSNEMHREALRLLNQLVEESKSEMENTDFNKKFNPQMILEYLR
PLCRSDPMLVLESSLYVLERNPSETIQLFLFENVPADLVNSYLKQHAPNLQSTYLELMLS
MNDTGINPNLQNELVQLYLSEVLDWYKILKEEGNWTERTYSPTRKKLISTLESNSGYNTD
LLLKRLPQDALFEERAILYGKINQHLRALSLYVHKLQMPERAVAYCDRVYEEREQQPSKS
NIYFNLLQIYLNPRKAEKEFEQKIIPVASQYSGIQKATATKLKGGRIGKKVVEIEGADDI
RFSPSGTDSGRSDGDGDDVNDGGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQDLV
SFLEPLLRNSSEHRHNYLVIKNLIFRANLQVKEDLYKRCQAVVKIDGDSTCSLCHKRVAN
SAFAIYPNGQTLVHFVCFKESQQIKAVRGANSVKRR
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggtgcatagcgcgtatgatgctgtcgagctggtggccgacgtgccgggccacatcgag
gccgtagcctcccacgctgggaagctcctcgtcgcggtttccgacaccgaaggcttcctc
tggggctccgactgctccctgcgcatctactccgctccttccccctcctccgacggcggc
ggcgagatccggtgggacgggccctacgcgctggagcggcaggagccgcggttctggcgg
cgcccgcccttagccatggaggtcagcgccagtagcgacctcctgatctcgctctccgag
tgggtcgcgctccaccgcctccccgggctcgagaccgtcgccgtcgtctctagcaagaca
aagggggccaacgtgtttgcctgggacgagcggcggggcttccttgccgtcggtcgacag
aagcgactgaccgtcttccgcctcgacagtgggcgagaatttgttgaagtgaaggaattt
ggagtgccagatattttgaaatcaatggcctggtgtggtgataacatatgtcttggaatc
aggcgggaatatatgataataaatagcatgactggggcactaacagaagtgttttcttct
gggaggatcgctcctcctttagttgtgcctcttcctactggggaactgatccttggcaag
gataacattggggtatttgtttatcaaaatggcaaacttattcaagacagcagaataatt
tggtcagacacaccagcttctgttgttatacatagaccatatgctgtggcacgcctgcca
cggcatgttgagatacgctctcttagggcccccaatgcattggttcagacagttgtgctc
cgtgatgttcaaaagcttgtccaaactgacaactgtatacttgctgcgctatctaactcc
gttcatggtttgttgcccgttcctattggcgctcagatagtgcaattgaccgcttctgga
gaatttgatgaggcactagcattgtgtaagctacttccaccagaggattcaaatttacga
gctgcaaaggaaagctcaatccacataagatatggacactttttgttcgatagtgggagc
tatgaggaggcaatggaacagttttcagattcacatgtggacattacttacgttttatct
ctgtacccatctattgttctgcctcaaacaaatattataggtgaacatgacaagctgctg
gacatgccagaattagcaagggaatcctctgatgtgacagatgagatggaatcatactct
ttacagcttcatgaatcagatgataaatctccattggaggtaaagaaaatgagtcacaat
gctctagctgcccttgtgaagtatttgcagaagaaaagaagtggaataattgagagagcg
acggctgaagtcacagaggaggtggtctctggagctgttcaccacagcttgaaattatct
gagccatataagccaaagaagctgagcaagaaacgagctcagacacatacaagctctatt
gctagagaaatggcaactgtactggatacttctctgcttcaagctcttattcttactggg
cagtcatcaggggcaatagagctgttgaaaggactcaattattgtgacctgaagatatgt
gaagagtttttgaaggaaaggagtgaatatatggttttacttgaactctataaaagcaat
gaaatgcaccgtgaagctctccgattactcaatcagttagttgaagaatcaaaatctgag
atggagaatacagattttaataaaaaatttaaccctcaaatgatacttgaatatctcagg
cccctttgtagatctgacccaatgctggttttagagtcttccttgtacgtccttgagcgc
aacccatcagaaactattcagctctttttgtttgaaaatgttccagcagatttggtaaat
tcatatctgaaacagcatgctccaaatttgcagtcaacatacttagaactaatgctctca
atgaatgatactgggatcaaccctaatctgcaaaacgagctggtgcaactgtacctttct
gaagttctagactggtacaagattctgaaggaagagggaaactggacagagagaacatat
tccccaacacggaagaagttaatatccacattggagagtaattcaggttacaatacagac
ttacttcttaagcgccttcctcaggacgctctttttgaggagcgagctatattgtatggg
aaaataaatcaacacctcagagcgctctctctctatgttcacaagctccagatgccagag
cgagcagttgcatattgtgaccgtgtttatgaggaaagagaacaacaaccatccaagtca
aatatctattttaatcttctacaaatttatctgaacccaagaaaagctgaaaaagaattt
gagcagaaaattattccagtcgcatcacaatactctggaatccaaaaggctactgctact
aagctcaaaggggggcgcataggtaaaaaggtcgttgagattgagggggctgatgacata
cgctttagccccagcggaacagatagtggccgaagtgatggtgatggagatgatgtaaat
gacggaggccctataatgttaaatgaagcactggaactgttaagccaacggtgggacaga
ataaatggtgctcaggctcttaggctgttaccaagagacactaaactccaggatcttgta
tcatttcttgagccactattgcggaactctagtgaacatcggcacaattacttggttatc
aaaaacttgattttccgggcaaacttgcaggtcaaggaggatctgtataagcggtgtcaa
gctgttgtcaagattgatggagatagtacgtgttctctttgccataagcgtgttgcaaat
agtgcttttgcaatatatccaaatggacagactttggtgcattttgtctgctttaaagaa
tcacagcaaattaaggctgtcagaggagcaaactctgtgaaacgtagataa
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