Miscanthus floridulus: 136520087
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Entry
136520087 CDS
T10264
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136520087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136520087
Spliceosome [BR:
mflo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
136520087
Complex C
U5 SnRNP specific factors
136520087
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
136520087
NCBI-ProteinID:
XP_066369584
LinkDB
All DBs
Position
18:complement(26710891..26721298)
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AA seq
2363 aa
AA seq
DB search
MWNGAPPPPPPQMAAAPPPPGTTVPGAGQPPPPPPPAGAPQSGKPLTPAELEAQLVEKAR
KWHQLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFV
PHAVYKLLENMPMPWEQVRHVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREK
RDRRHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLDLDEEEDAAVYEWFYDHKPLMK
TKLINGPSYRKWHLSLPIMATLYRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGG
PKFEPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVKLGIYHTPM
IMYIKTEDPDLPAFYYDPLINPITSTNKVDRRERKAIEEDDDEDFCLPEDVEPLLKQTEL
YTDTTAAGISLLFAPKPFNMRSGRTRRAEDIPLVSDWFKEHCPPAYPVKVRVSYQKLLKC
YVLNQLHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQ
LADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPM
WRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDV
LDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNV
AHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTT
VHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDN
PHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKR
HLFPNWVKPADSEPPPLLVYKWCQGINNLLDIWDTSDGQCVVMLQTKFEKFFEKIDLTLL
NRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLIL
GLTRASEIAGPPQMPNEFLTYADTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRY
LTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS
FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRV
DDEHMKVXENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE
NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTH
FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRCWAEYALKRQEAQSQNRRLTLEDLEDSW
DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT
DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR
RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD
LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWTMSKPSLVSESKDLF
DQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLH
SAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF
SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR
LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP
FQACLKIEKFGDLILKATEPQMVLYNIYDDWLKSISSYTAFSRIVLILRALHVNNEKAKM
LLKPDKTIVTEPHHIWPTLNDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEMRDIIL
GAEIAPPSQQRQQIAEIEKQSRETTQLTAVTTRTTNVHGDELIITTTSPYEQQAFASKTD
WRVRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQIAGFLYGLS
PQDNPQVKEIRCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQD
LTSHAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDNGSNPHGYL
PTHYEKVQMLLSDRFLGFYMIPDNAPWNFNFMGVKHDPQMKYNMKLGMPRDFYHEDHRPT
HFLEFSNIEEGEVAEGDREDTFT
NT seq
7092 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacggcgcgccgcctccgcctccgccgcagatggcggcggccccgcctccccct
ggcacgacggtgcccggggcaggccagcccccgcccccgccgccgccggccggggcaccg
cagagcggcaaaccgctgacaccggcggagctggaggcgcagctggtggagaaggcccgc
aagtggcaccagctcaactccaagcgctacggcgacaagcgcaagttcgggttcgtggag
gcgcagaaggaggacatgccccctgagcacgtccgcaaaatcattcgagaccatggagac
atgtcttccaagaagtacaggcacgacaagcgtgtttatcttggagcactcaaatttgtg
ccccacgctgtctacaaactgctggagaacatgccgatgccttgggagcaggttcgccat
gtgaaaatcttgtatcatatcactggggctatcactttcgtaaatgaaatcccatgggtt
gttgaacccatataccttgcacagtggggtacaatgtggattatgatgcgtcgagagaag
agggatagacgtcattttaaacgaatgcgctttcctccatttgatgacgaggagccccca
ctggactatgctgataatttgttggatgttgaaccacttgaagctatacagttggacttg
gatgaggaggaagatgcagctgtctatgaatggttctatgatcacaaacctctgatgaag
acaaaacttataaatggccccagttacaggaaatggcatctatctcttcccattatggca
acactatatcgccttgctggccagctgttgtcagatctgatcgataggaattatttctac
ctatttgatatggagtccttctttactgccaaggcccttaatatgtgcattccagggggt
ccgaagtttgagccattataccgtgatatggagaagggtgatgaggactggaatgagttt
aatgacataaataagctcatcatacgtcagccacttcgaactgagtacaggattgctttc
cctcacctatataacaacaggccaaggaaagtgaaacttggtatctatcatacccccatg
ataatgtatatcaagactgaagatccagacttgccagcgttctactatgatcctctgata
aaccctatcacttcaaccaacaaggttgatcgtcgggagaggaaagcaattgaagaggat
gatgatgaagatttttgtctcccagaagatgtagagcctctcttgaaacagactgaactc
tacactgatacaacagctgctggtatatcattactttttgctccaaagccttttaacatg
agatctggtcggacacgtcgtgcagaggatattcctcttgtatctgattggttcaaggaa
cattgccctccagcttatcctgtgaaagttcgtgtgagctatcagaagctattgaagtgt
tatgtgctcaatcagctacatcataggcctcccaaggctcagaaaaagaagcatctgttc
cgttcactccaagcaactaagtttttccaaactactgagcttgactgggcagaagcaggc
ttgcaagtttgcaagcaggggtacaacatgctgaacttgttgattcacaggaagaatctt
aactatcttcatttagattacaatttcaatttgaagcctgtgaagactcttacgacaaag
gaaaggaagaagtctcgttttggaaatgcatttcatctgtgtcgtgagattttacgactt
acaaagttggttgttgatgctaacatacagttccgtctgggaaatgtcgatgccttccag
ttggcagatggtctgcaatatatattttctcatgttgggcagttaactggtatgtatagg
tacaagtaccgattgatgaggcagattaggatgtgcaaagatctgaagcacttgatatat
taccgtttcaacactggtcctgttggtaaaggacctggttgtgggttttgggctccaatg
tggagagtgtggctcttcttccttcgaggtatcgtcccactattggagcgctggttgggt
aatcttttggcacggcagtttgagggtcgtcattccaagggtgtggccaaaactgtaaca
aagcaacgtgttgagtctcactttgatttagaacttcgtgctgcagttatgcatgatgtt
ctagatgctatgccagaaggcatcaagcaaaacaaggctcgaactatattacagcatctt
agtgaggcatggcgatgctggaaggcaaatatcccatggaaagtccctggtctgcctgtg
cctattgagaacatgattcttcgttatgtgaagtcaaaggcagactggtggacaaatgtt
gcccactacaatcgtgagcgtatcaggcgtggtgctacagttgacaaaactgtttgtcgg
aaaaatctaggaaggttaactcgtctgtggctgaaggcagagcaagagaggcaacacaat
tacttgaaagatgggccatatgtaactcctgaagaagctgttgctatctatacaacaact
gttcattggctggaatcaagaaagttctcgccaattccttttccgccgttgtcatacaag
catgacactaaacttcttatacttgcactggaaaggctgaaggagtcatacagtgtagca
gttagattgaaccaattgcaacgagaggagcttgggttgattgaacaagcgtatgataat
ccacatgaagcactgtcaaggataaaaaggcatctccttactcagcgagctttcaaagaa
gtcggtatagaattcatggacctgtacagctacttgattccggtatatgaaattgaacct
cttgaaaagatcactgatgcataccttgaccagtacctgtggtacgagggggacaaacga
cacctcttcccaaattgggttaaacctgctgattcagaaccaccacctcttcttgtttat
aaatggtgccagggcataaataatttactggatatatgggacacaagtgatggacagtgt
gttgtgatgctccagacgaagtttgagaagttctttgaaaaaattgatctgactctgttg
aacaggcttctgcggttggtcttggatcataacatagctgactatgtcactgcaaagaac
aatgtagtgttgtcttacaaggacatgagtcacacaaattcttatggtctcattcgaggg
cttcaatttgcatcttttgttgttcagtattatggccttgtgctggatctcctgattctt
ggtctaactcgtgcaagtgagattgctgggccacctcaaatgccaaatgagttccttaca
tacgctgacacaaaagttgagacaaggcatcccatcagattgtattctcgatatattgac
aaggtgcatatattgttccggttcacccatgaggaagcacgagatctgattcagcgttac
ttgacagaacatcctgatcctaacaatgagaacatggttggttacaataacaagaaatgt
tggcccagagatgcaagaatgaggcttatgaaacatgatgtgaatcttggaagaagtgtg
ttctgggatatgaagaaccgtcttccaaggagcattacaactttagaatgggagaatagc
tttgtctctgtttacagcaaggacaatccaaacctgctttttagcatgtgtggctttgaa
gtccggatactgccaaagatacggatgactcaggaggcgttcagcaacacaaaagatgga
gtatggaatttgcagaatgaacagacaaaagaaaggacagcaattgccttcctgagggtt
gatgatgaacatatgaaagtgnttgagaaccgtgtccggcaaattctaatgtcatcaggg
tcaacaacattcacgaagatagtcaataagtggaatacggctctcattggtcttatgaca
tattttcgtgaagcaactgtccatacccaggagcttttggatttgctagtcaaatgtgaa
aacaagatccagactcgtataaagattggcctgaattcaaagatgcctagcaggtttcct
ccagttatcttctatactcccaaggagattggaggtcttggaatgttatcaatgggccat
attcttataccgcagagcgatcttaggtatagcaagcagacagatgttggtgtaacacat
tttagaagtggtatgagccatgaagaggaccagcttattccaaacttgtaccgctacatc
cagccatgggagagtgagttcattgattcacagcggtgttgggctgagtatgctttgaag
aggcaggaagcacaatcacagaacagacgattaactcttgaggatcttgaagactcgtgg
gatcgaggtatacctcgtatcaacactcttttccaaaaagaccgccatacgctggcctat
gacaaaggatggagagtgagaacggattttaagcaatatcaagtgctgaaacagaaccca
ttctggtggacacatcagcggcatgatgggaagctttggaatctaaataactacagaact
gatgttattcaagcacttggtggtgtagaaggcatcctggagcatacattatttaaaggg
acttatttccctacttgggagggtctgttttgggagaaggcatcaggtttcgaagagtca
atgaaatacaagaagctgacaaatgcacagcgttctggtctcaatcaaatccctaatcga
agatttaccctgtggtggtcaccaaccatcaatcgtgcaaatgtgtatgttggtttccag
gtccagctagatcttacggggatattcatgcatgggaaaatcccgacattgaagatttct
ctgatccagatcttccgtgcacatctgtggcaaaagatccatgaaagtgttgttatggat
ctttgccaagttttagaccaggagttggatgcacttgagattgagactgtgcagaaggag
acaatacatcccaggaagagttacaagatgaacagctcctgtgcagatgtacttctcttt
gctgcacacagatggacgatgtccaaaccaagcttagtttctgagtcgaaggatctcttt
gatcagaaagcaagtaacaaatactggattgatgtgcaactgcgttggggagactatgat
tcacatgacatagaacgttatacaagagccaagttcatggattacacaacagacaatatg
tccatatacccatcgccaactggtgtgatgattggaatcgatctagcgtataatttgcac
tctgcttttggcaactggtttcctggatcaaagccactacttcagcaggcaatgaacaag
atcatgaagtcaaatcctgctctgtatgtcctgagggagagaataaggaagggtctgcag
ttgtactcttctgaacccactgaaccatacctgtcttcacagaactatggagagatattc
agcaatcaaatcatatggttcgtggatgatacaaatgtgtatcgagtcactattcacaaa
acatttgagggtaacttgaccaccaaaccaatcaatggtgctattttcattttcaatcca
agaacgggtcaactttttcttaaggttatccacacaagtgtatgggcggggcaaaaacgt
cttgggcagctggccaagtggaaaacagctgaggaggttgctgcattagttcgatctctt
cctgttgaagagcagccaaagcaaattattgtgacaaggaagggcatgttggatcccttg
gaggtccatctacttgacttccctaacattgttatcaagggcagcgagctgcagcttcct
ttccaggcttgcttgaagattgagaagtttggtgatcttatactgaaggcaactgaacca
cagatggttctttataatatatatgatgattggttgaaaagtatctcatcatacacagca
ttctctcgcattgtgcttattctacgtgcacttcatgtgaataatgagaaggcaaagatg
ttgctcaaacctgacaaaacaattgttactgaaccacatcatatatggccaactctgaat
gatgaacagtggttgaaggttgagtgtgcactaagggacctcattctttctgattatgca
aagaaaaacaatgttaatacttctgcactcacacaatctgaaatgcgagatatcatcctt
ggtgctgaaattgctccaccatcacagcagaggcaacagattgctgaaattgagaaacag
tcaagagagacgactcagttaactgctgtaaccacaaggactacaaatgttcatggagac
gaactcattatcacaaccacaagtccatacgagcaacaagcatttgcatcaaagactgat
tggcgtgtcagagccatctctgccacaaacttgtatcttcgtgtaaatcacatttatgtc
aattctgatgatataaaggagactggctacacttacattatgccaaagaacatattgaag
aaattcatatgcatagcagatctgcggacacaaattgctggattcttgtatgggttgagt
ccacaggacaatcctcaagtaaaagagattaggtgtatagccattcctccgcagcatgga
acacaccagatggtgactctgccagcaaatcttcctgagcatgagttccttaatgatctc
gaacccttgggatggatgcatacacagccaaatgaagctccacagctatcgccacaggac
ctgacatcacatgccaagattctggagaataacaaacaatgggatggtgagaagtgcatc
attctgacatgcagcttcaccccaggatcttgctcgttgactgcatacaagttgacacca
agcggttacgagtggggacgcagcaacaaggacaacggaagcaacccacatggatacctc
ccaactcattacgagaaggtccagatgcttctgagcgaccgcttccttggtttctacatg
attccggataacgccccttggaacttcaacttcatgggagtgaagcacgacccacagatg
aagtacaacatgaagctgggcatgccccgggacttctatcacgaggaccacaggccgacg
cacttccttgagttcagcaacatcgaggagggagaggtcgctgaaggtgatagggaggac
acattcacgtag
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integrated database retrieval system
