Miscanthus floridulus: 136520387
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Entry
136520387 CDS
T10264
Name
(RefSeq) endoribonuclease Dicer homolog 2a-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mflo03036
]
136520387
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
136520387
microRNA pathway
RISC loading complex
136520387
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Helicase_C
Dicer_dimer
ResIII
PAZ
Cas3-like_C_2
dsrm
AAA_22
Motif
Other DBs
NCBI-GeneID:
136520387
NCBI-ProteinID:
XP_066369989
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All DBs
Position
2:complement(25717015..25747753)
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AA seq
1402 aa
AA seq
DB search
MSHAEAAEEVVMEEEDPPPPCDRQTQARWYQLEALERALAGNTLVFLETGAGKTLIAVLL
LRRFAHRIRSAPPPSFAVFLVPTVVLVNQQAGVIEAHTDLRVAQFYGEKGVDFWDADTWR
EKIDGAEVLVMTPQILLDNLRHSKFRLRDIPLLIFDECHHATGNSPYACIFKEFYHPQLK
SRPSDPIPRIFGMTASLINSKDLARVKYPVKISQLENLMNAKVYTVASESALLQYIPFAT
TRIVEYDDYIVKPELYSHTIRCLNKLKAKHLEILKGKLHGSSLKNAEKRIKKLNAMFLYC
ISELGLWLAAKAAEVLQSNKEICVSFWGEKLDEKVEGFIRNYIEDVNNDLSEIILKMTKR
GHIGEDFDADLQDWLLTSKVYFLIKSLLEYRHMQDLRCIVFVKRVITSIVLEALLSTINQ
MSGWSVTHMAGRNFGLQHQNRNKHVEIVDSFRSGKVHLIIATQLLEEGLDVPSCNVIIRF
DQATTVRSFIQSRGRARMQNSDYVLLIRRHVFQGDADALSKMEGFLASGQIMREESQRLE
STCCQPPPNTLCDEEVYRVQSTGAIVTLNSSIRLIYSFCSKLPSDEYFIPLPRFNINKTL
GTCTLHLPMSSPVQTVFAEGEVSIIKKVVCLNACRELHAVGALTDRLLPELSVPCEDEPD
IVVDKYKKEQPDYFPEQLMDNWLSFCRRGLYYCYKISLEGCSEMTSPAEIVLAVKCDMGS
DFISNSFKLWGMQDYLSFTIRYVGVIHLNQEQVIVARRFQTTILSLLISNDLLEVSNSIK
SLLEMQVSPGAVYLLLPVVSGKIDWCSIKFSASEILEDSNMDIRHSHCCKGTGLVQTKGG
PFCPGMLQNSVVCTPHNGFFYAVSGFLDLNANSLLHKSDGSVLSYKTHFKERHGIDLKCE
DQPLLDASRLLKVRNFLHKCNYKKEKEGSSTNVFELPPELCIVVMTPVSANTLRFFTLVP
SIMYRIQCMLLSMNLKMQLGPSMKQFDIPTLKILEALTAKKCNEEFSQESLETLGDSFLK
YITTQHLFSKYRHQHEGTLTKMKKNLISNAALCELACSNNLVGYIRSEAFNPETWTIPGV
GYDLCGRSLRKLKSKRIADSVEALIGAYLSAAGEQAAYLFLKSLGMDIGFHKMPVERKIT
IKPEELINLRSLELMLDYNFSDPSLLMEALTHGSYQIAGTTACYQRLEFLGDAVLDHIFT
DYFYHQYPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKRMADYLDKFG
QSFSGPSHGWEAGICLPKVLGDVIESIAGAIYIDAKHDKKVVWRSMKRLLEPLATPDTLE
IDPVKELHEFCDPTTCSIKYTVTCEDRVSSVVVEVQTKGITYKAARTGLTKLDAKKLAAK
SVLQDMKAANRTQHFANGISCT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacgccgaagccgccgaggaggtggtgatggaggaggaagatccgccgccgccc
tgcgaccggcagactcaggcgagatggtaccagctcgaggcgctggagcgcgcgctggcc
gggaacacgctggtgttcctcgagacgggcgccgggaagacgctcatcgcggtgctgctc
ctccgccgcttcgcgcaccgcatccgctccgccccgccgccctccttcgccgtcttcctc
gtccccaccgtcgtgctcgtgaaccagcaggcgggcgtcatcgaggcgcacacggacctc
cgcgtcgcccagttctacggcgagaagggcgtcgacttctgggacgcggacacctggcgc
gaaaagatcgacggggccgaggtgctcgtcatgacgccgcagatcctcctcgacaacctc
cgccacagcaaattcaggctgcgggacatcccgctcctcatcttcgacgagtgccaccac
gccaccgggaattcgccctacgcctgcatttttaaggagttttatcatccccagttgaag
tctaggccatcagatcctattccaaggatatttgggatgacagcttctctaattaattca
aaagatctggcgcgtgtcaaatacccagtgaaaatttctcagcttgagaatctcatgaat
gcgaaggtgtatactgttgccagtgaatcagcactattgcaatacattccatttgcgact
acaaggatagtcgagtacgatgattatatcgtaaagcctgagttatatagccatacaatc
cgttgcttgaacaaattgaaagcgaagcatttagaaatcctgaaggggaaactgcatggt
tcatccttgaaaaatgcagagaaaaggataaaaaaattaaatgcaatgttcttatattgc
atatctgaacttggactatggctggcagcaaaggctgctgaggttctacaatcaaacaag
gaaatctgcgtatccttttggggagaaaaactggatgaaaaagttgagggattcattaga
aactatatcgaggatgtaaacaatgatctctcagaaattatattgaagatgacaaagagg
ggacatattggtgaggactttgatgcggatttgcaagattggttattgacatccaaagtt
tattttcttattaaatctcttctggagtataggcatatgcaagatttgagatgcattgtt
tttgttaagagagttattacaagtattgtgttggaggctcttctttcaactattaatcaa
atgtctggatggagtgttacacacatggcagggagaaattttggtttgcaacatcagaat
aggaataagcatgtggaaatcgttgattcatttcggagtggaaaggttcacctgattatt
gccacacaacttttggaggagggactggatgtgccaagttgtaacgtgataatccgcttt
gatcaggcaacaactgtacgcagttttatacagtcacgtggtcgagctaggatgcaaaat
tctgactatgttttacttatcagaaggcatgttttccagggagacgctgatgctctttct
aagatggaggggtttctcgcaagtggacaaatcatgcgtgaagagtctcaaagactggaa
tctacttgttgtcagcctcctccaaacaccctatgcgatgaagaagtttatcgtgttcaa
tctactggagcaattgtgactctgaactctagtattcgattgatttactctttctgctca
aagctaccttccgatgagtattttatacctctaccaagattcaatattaacaagacatta
ggtacatgtacgctgcatcttccaatgagcagtcctgtacaaacagtttttgctgaagga
gaagtttctatcatcaagaaggttgtttgtctcaatgcctgccgggaattacatgctgtt
ggtgctctcacagatcgtctcttgcctgaattgagtgttccatgtgaagatgaacctgac
attgttgtggacaaatacaaaaaggagcaacctgactactttccagaacaactaatggat
aattggttgtctttttgtcgtcgtggcttatattattgctacaagatctcactggaaggt
tgttctgaaatgacttctccagctgagatagtattagctgtaaagtgcgatatgggatct
gacttcatctcgaactcattcaaattgtggggtatgcaagattatttgagttttaccata
agatatgttggcgtgattcatctaaatcaggaacaggtaattgtcgccagaagatttcag
acaacaattctttctttgcttattagtaatgatcttttggaagtcagcaattctattaag
agtttacttgaaatgcaagtatctcctggagctgtgtacctacttctgcctgtagtttct
ggaaaaattgattggtgcagcatcaaattctcagcctcagaaattcttgaagacagtaat
atggatattagacacagccattgttgtaaaggtactggtttagtgcagacaaaaggtggc
cctttctgcccgggcatgcttcaaaattctgttgtctgtaccccgcataatggcttcttt
tatgctgtttctgggtttcttgacttgaatgctaattcgcttctgcataaaagtgatggg
agtgttcttagctacaaaacccattttaaggaaaggcatggcattgatttaaaatgtgaa
gatcaacctctcttggatgccagtagacttctgaaagtgcggaacttcctccacaagtgc
aactataaaaaagaaaaagaaggcagcagtacaaatgtgtttgaattgccacccgaactg
tgcatagttgtcatgacgccggtgtcagcaaatactttgcgcttcttcacattagttcct
tctataatgtatcgtatccaatgtatgcttctttctatgaatttgaaaatgcaattgggt
ccaagcatgaagcagttcgatattcccacattaaagattttggaagcactaacagcaaag
aaatgcaatgaggaattttcacaggaatcattagaaacacttggggattctttcctcaag
tatattacaactcaacacctctttagcaaatacagacatcagcatgaaggcacgctaacc
aagatgaagaaaaacttgatctcaaatgcagctttatgcgagctggcctgcagtaacaat
cttgtgggatacattcgaagcgaagctttcaaccctgaaacgtggactattccaggggtt
gggtatgacttatgtggtaggagtctgaggaagctgaaaagtaagagaatcgcagattca
gttgaagccttaattggggcatatcttagtgctgctggtgagcaggcagcatatcttttc
ttaaaatctttaggaatggatatagggtttcacaaaatgccagttgaaaggaaaattaca
atcaagccggaagaactcattaaccttagaagtttggagctaatgcttgactataatttc
agtgatccatcattgttgatggaagcactgacacatggttcatatcagattgctggcact
actgcgtgctatcagcggctcgagtttcttggagatgctgtattagatcatatttttact
gattatttctaccatcagtaccctgaatgcactccagaactgttgacagatctgagatct
gcttctgtgaacaatagctgctatgctcatgcagcggttaaagcaggattacataagcat
attctacattcgtcatcagcgctgcacaaaaggatggctgactacctcgacaagtttggg
cagtcattttcaggtccatcacatggttgggaagctggcatctgtctacccaaggttcta
ggtgatgtaattgaatctatcgctggtgcaatctacattgatgccaagcacgacaaaaaa
gttgtttggagaagcatgaaacggctactggaacctcttgccacccccgacactcttgag
attgaccctgtcaaagagcttcatgaattctgtgatcccacaacgtgcagtatcaagtac
acggtaacttgtgaggaccgagtatcctcggtggtcgtagaagtacagaccaaagggatt
acatacaaggccgctcggacaggcctcaccaagcttgacgccaaaaaattggcagccaaa
tccgtgctccaagatatgaaggccgcgaatagaacgcagcattttgcaaatggtatcagt
tgcacttaa
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