Miscanthus floridulus: 136520417
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Entry
136520417 CDS
T10264
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mflo Miscanthus floridulus
Pathway
mflo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136520417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136520417
03036 Chromosome and associated proteins [BR:
mflo03036
]
136520417
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
136520417
Coactivators
SAGA/TFTC/STAGA complex
136520417
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
136520417
STAGA complex
136520417
TFTC complex
136520417
SAGA complex
136520417
SLIK complex
136520417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_THOC3
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Tricorn_2nd
RecX_HTH3
Beta-prop_ACSF4
PALB2_WD40
Cytochrom_D1
VPS8_N
Motif
Other DBs
NCBI-GeneID:
136520417
NCBI-ProteinID:
XP_066370017
LinkDB
All DBs
Position
18:complement(88922267..88932314)
Genome browser
AA seq
657 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRLSTSATSDVALARSDNDPARYHDGYSRL
RTWAYSSLDQHKHELLRVLYPVFIHSFMDLVAEGHMQEARSFFHTFREDHEVMHSRDLQM
LEGVLSPSHLEEMELARSFRKNKFKIKLCEYSYELLLQYLQKTQALVVLGVINEHITFEV
SPGQPSLISDDADVVALIGTSKDLAKQINQEEVHWGLLEDSVEERMEKALAESDKIEAES
KDADAEDNKKRNAEGGKQGASLKKAKKDKLVGATGKNVRTETSMVSVAPRVKPELTLPAT
PVEVEQSILEDLRNRAQLNSVALPSVSFYTFVNTHNGLNCSSISHDGSLVVGGFSDSSVK
VWDMSKIGQPAKMSSSQSENGSSQGERISTLDEGKRTYTLFQGHSGPVYSAAFSPFCDFL
LSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKIQ
PLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMS
PDGRYMASGDEDGTIMIWDLSTGRCVSPLLGHSSCVWTLAFSCEGALLASGSADCTVKLW
DVASSTKTLKTEDTKGSSANRLRLLKALPTKSTPVYSLRFSRRNLLFASGVLSLNSS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcgcaaggggttccgc
ctcaccgagcttgcgctccaggaggagcgcaaccgcctctccacctccgccacctccgac
gttgcgcttgcccggtctgacaatgatccagcaagataccatgatggatatagcagatta
agaacatgggcatatagttctcttgatcaacataagcacgaattacttcgcgtcctttac
ccagtttttatccatagcttcatggatctagtggcagagggacatatgcaggaagcgcgg
tcatttttccatacatttcgggaagatcatgaggtgatgcattcaagggatcttcagatg
ctggaaggcgtcctctctccttcacacttggaggaaatggaactggcccgatcttttagg
aaaaataaatttaaaattaaattatgcgagtattcgtatgaattgcttctccagtatctc
cagaaaacacaagcccttgtggtgcttggagtaatcaatgagcacataacttttgaagta
tctcctgggcagccctcattaatctctgatgatgctgacgttgttgctctgattgggaca
agcaaggacttggcaaaacagataaatcaggaggaagtacattgggggttgcttgaagat
tctgttgaagagcgaatggagaaggcactagcagaatctgataaaatagaagctgaaagc
aaggatgctgatgcagaagataacaagaaaagaaatgcagaaggtggaaagcaaggtgct
tctcttaagaaggccaaaaaggacaagcttgtaggtgcgactggaaaaaacgtcagaact
gaaacaagcatggtttctgtggcacctcgagtgaaaccggagctaactctcccagcaacg
cctgttgaagttgaacaatcgattcttgaggacctgcgaaaccgtgcacaactgaatagt
gtggcattgccatctgtcagcttctacacattcgttaatacacataatggattaaactgc
tcatcaatatcacacgacggatcgctggttgttggtgggttttctgattcgtcagtgaag
gtctgggatatgtcaaagattggccaaccagcaaaaatgtccagttcacagagtgagaat
gggtcttcccagggtgagcgcatatcgacattagatgaggggaaaagaacctatacacta
tttcaaggccattctggaccagtttattctgcggcctttagcccgttttgtgatttcctc
ttatcatcatcttcagactcgacaataagactatggagcaccaagttgaatgccaatctt
gtctgttacaaaggacacaactacccggtttgggatgtccaattcagcccagttgggcat
tactttgctagtgcttcacacgacaggactgctagaatttggtcaatggataaaatccag
cctttgcgaataatggctgggcatctttctgatgttgattgtgtccagtggcatgtaaac
tgtaactacattgccaccggctcgagcgataaaactgtaagactctgggatgttcagacg
ggtgaatgcatacggatgtttattggtcataggagtatggttttatcactggcaatgtca
cctgatggacgatacatggcctctggagatgaagatggaacaatcatgatatgggatctc
tcgactggccgttgtgtttcaccactactaggacacagttcttgtgtgtggacacttgct
ttcagttgtgaaggagcattgcttgcatcgggatcggccgactgtactgtaaagctctgg
gatgtcgcttccagcacaaaaaccctgaagacagaggacaccaaaggcagctcagctaac
cgactgagactgcttaaagctctccctacaaaatcaactcctgtttatagcctgcggttt
tctcggaggaaccttctatttgcctctggtgttctctcgctaaactcgtcgtaa
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