Miscanthus floridulus: 136520881
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Entry
136520881 CDS
T10264
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136520881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136520881
03012 Translation factors [BR:
mflo03012
]
136520881
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136520881
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136520881
Translation factors [BR:
mflo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
136520881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
NACHT
AAA_19
ABC_tran
T2SSE
Motif
Other DBs
NCBI-GeneID:
136520881
NCBI-ProteinID:
XP_066370658
LinkDB
All DBs
Position
2:29943978..29954881
Genome browser
AA seq
1048 aa
AA seq
DB search
MLLHSSACRGSRVLSSSCSSSGGSSQFLPSRFASTPLKTLGTLRTLAVMSYRGGPNSHRG
RGRGRGRGGGGGRGGRGGGGGGRGEQRWWDPEWRAERLRQMNGDVEKVDENEWWNKIGQL
REGSQQELVVKQNFGRDGQNILANMAQRQGLYFNAYNRGKTLVFSKVPLPDYRADLDDRH
GSTQKEIKMSNQTEVRVEDLLSRSKWNTNNSASTSTVSMRHFLPSASSSVVEPAAPIDKE
KLSSQLRDLQNSWKTTASARSMQSFREKLPAFSMREEFLKAVAANQVLVISGETGCGKTT
QLPQFILEEEINNLRGSDCSIICTQPRRISAVSVAARVAAERGEELGEAVGYQIRLESKR
SAQTRLLFCTTGVLLRRLVQEPDLIGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLC
LVLMSATINAELFSKYFGDAPVMHIPGFTFPVAELFLEDVLEKTRYRINSERDNFAGSSR
RKRFASVKSDPLSDVFENIDINKEYGNYNITIRQSLEAWSAAELDLSLVESTIEYICRYE
AEGAILVFLTGWDEISKLLDKIKGNNFLGSPNRFLVLPLHGSMPTVNQREIFDRPPASMR
KIVLATNIAESSITVDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGR
VQPGFCYRLYPKTIHDAMPQFQLPEILRTPLQELCLTIKSLQLGAVSSFLAKSLQPPDPL
SVKNAIELLKTIGALDDTEELTSLGRHLCTLPLDPSIGKMLLMGSVFQCLDPVLTIAAAL
AYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALLKAFVAWKEAKRSGRERTFCWENFLS
SMTLKMMDDMRNQFFDLLSDIGFVSKATGVKAYNHYGNDLEMICAVLCAGLYPNVVQCKR
RGKRTAFYTKDVGKVDIHPSSVNAFVNQFPLPFLVYSEKVKTASIYVRDSTNISDYALLL
FGGSLSPSKTGEGIEMLGGYLHFSAPKRTIELIQKLRGELDILLQKKIEEPGLDIFSQGK
GVVADIFSQGKGVVAAAVELLHSQNFNH
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgctcctccactcttctgcctgccgcggcagccgcgtcctctcctcctcttgcagcagc
agcggcggcagcagccagttcctcccctcccgcttcgcgtccacccccctcaaaacccta
ggtacgctcaggaccctagctgtcatgtcgtaccgcggagggcccaactctcaccgcggg
cgcgggcgcgggcgcgggcgcggcggtggcggaggcaggggaggccgcggcggcggcggc
gggggacgcggggagcagaggtggtgggacccggagtggcgcgccgagcgcctccggcag
atgaatggggatgtggaaaaggttgatgagaatgaatggtggaacaagattgggcaatta
agagaagggtcccagcaggagctagtagtcaagcagaattttggacgggatggacagaat
atacttgcaaacatggctcagagacaagggctttactttaatgcatacaacagagggaag
acacttgttttcagcaaggtacccttacctgattatcgagcagatctggacgacaggcat
gggtcaacacaaaaagagattaagatgtctaatcagacagaggtgcgagtcgaagacctt
ttgtccaggtcaaagtggaacaccaacaattctgcaagcacatctactgtctcaatgaga
cattttttgcctagcgcatcctcgtctgttgttgaaccagcagcaccaattgataaagaa
aagctcagttctcagcttagggatttgcagaattcatggaagacgacagcaagtgctaga
tcaatgcaatctttcagggagaaattacctgcattcagcatgagagaggaatttctgaaa
gcggtggcagccaatcaggttctggtcatttctggcgagacaggctgcggtaaaacaacc
cagcttccacagttcatactagaagaagaaataaataacctccgcggttctgactgcagc
ataatttgtactcagccccgccgtatatctgctgtttcagtagcagcaagagtagctgct
gagagaggtgaagaacttggcgaggctgttggataccagattcgccttgaatcaaaacga
tctgcacaaacacggttgctgttctgcactaccggagttttgcttagaagactggttcaa
gagcctgacttaattggggtgagtcatttactagttgacgaaattcatgaacgcggcatg
aatgaagattttctcatcataatactgcgtgaccttctaccaagacgtccagatctttgc
cttgtactgatgagtgcaactataaatgctgaactattttccaagtactttggagatgct
ccagtgatgcacatcccggggttcacttttcctgttgctgagttgtttctggaagatgtt
ctagaaaagactcgttacaggatcaattccgaacgtgataattttgcaggtagttcaagg
agaaagaggtttgcatcagttaagagtgatccactgtctgatgtttttgagaacattgac
attaataaggagtatggaaattacaacattacaataaggcagtcccttgaagcttggtct
gctgctgaactagatttgagccttgtggaaagtacaatcgagtatatttgccgttatgaa
gcagaaggtgcaatccttgtgttccttactggctgggatgaaatttcaaagcttctggac
aagattaaagggaataatttccttggcagtcctaatagatttcttgttcttcctttacat
ggttctatgccaactgtgaatcaacgtgaaatttttgacagaccaccagctagtatgaga
aaaattgttttggcaaccaacattgcggagagtagtatcactgtagatgatgttgtctat
gtgattgattgtggtaaggccaaggagacaagctatgatgccttgaataagctggcatgc
cttcttccgtcatggatatcaaaagcttctgctcatcagaggagaggtcgcgcaggccgc
gttcagccaggcttttgctatcggctctatccaaagaccattcatgatgcaatgccacag
tttcagttgcctgaaattctcaggactcctttgcaagaactatgccttaccatcaaaagc
ttacagcttggagcagtatcctcctttttagccaagtcactgcagccaccagatccactt
tctgttaagaatgcaattgagcttcttaaaaccattggtgcactggatgatacggaggaa
ctcacttctcttgggagacatctctgtactctcccactggacccaagcattgggaaaatg
ctgcttatgggatctgtattccagtgcttggatccagtattgacaattgctgctgctctc
gcatatcgtaatccatttgtgctcccaatagatagaaaagaagaagctgatgctgtcaaa
agatcatttgctggtgactcctgcagtgaccacattgctcttcttaaggcgtttgtagca
tggaaggaggctaaaaggagtggtagagagcgcactttctgttgggaaaattttctgtcc
tccatgaccctgaagatgatggatgacatgcgaaatcaattttttgatctactatctgat
attgggtttgttagcaaggcaacaggagtgaaggcatataaccactatggtaatgatctg
gagatgatttgcgctgttttatgcgcggggctttacccaaatgttgtgcaatgcaaaagg
cgaggcaagaggactgctttctacaccaaagatgtggggaaagtggatattcatccatca
tcagtcaatgcattcgtaaaccaattcccattacctttcttggtttatagtgagaaggtg
aagactgctagcatttatgtaagggactcgacaaatatatcggactatgcccttctactt
tttggtggttcgcttagtccgagcaaaactggagaaggcattgagatgcttgggggttat
cttcatttctcagctccaaagcgtaccatagagttgattcagaaattaagaggtgaattg
gacatactccttcagaaaaagattgaggaacccggacttgacatcttttcacaaggaaag
ggtgtcgtggcggacatcttttcacaaggaaagggtgtcgtggcggcagctgtagaactg
ttacacagtcaaaatttcaaccattag
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integrated database retrieval system
