Miscanthus floridulus: 136521394
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Entry
136521394 CDS
T10264
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136521394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136521394
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136521394
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136521394
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
136521394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_3
TFIIA
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
136521394
NCBI-ProteinID:
XP_066371226
LinkDB
All DBs
Position
18:117136050..117142461
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AA seq
647 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDSVPAAGGGGPVPSSTDPGAGGGGGGDGPGMHGRGRGRGSYRQT
VCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNMYK
MGFCPNGPNCRYKHIKLPGPPPSVEEVLQKILQMRSFNRYGQNRNNNYNQQGERPQHPQG
SGMPNQNSAENATAVAPPAGGQQAQMLNQQPPQQQQQQKPNTNDQAQGVSNGHQATRIAT
PLPQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESTENVILIFSINRTRN
FQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSMQWLKLCELSFQKTHHLRNPYNDNLP
VKISRDCQELEPFIGEQLASLLYLEPDSELTAMLIAAEAKREEEKAKGVSADEAADNQDI
VLFDDNEEDEEEESEEEEEGNGQESQGRGRGRGMMWPPQMPMMRGPMMAGRGFPPNMMGD
GFGFGGGFGMPDPFGMPRGFPPFVGPRFPGDFARGPMPGMGFPGRPPQPFPLGLDMMMGP
GRGPLMGGMGMGGPGRPNRPMGMAPFVPPPPPNNRAAKREQRRPGGDRGDRFETASSDQG
SRGHDNTGNSGTDGARAQSGDRYGRSALRDDDSESEEEAAPRRSRKR
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacggcggactgagcttcgacttcgagggcggcctcgactccgtcccg
gcggccgggggcggggggcccgtgccgtcctccaccgaccccggcgcaggcggaggcgga
ggcggcgatgggccgggtatgcacgggcgcggccgaggtcgcgggagctaccgccagacg
gtgtgccggcactggcttcgcggcctctgcatgaagggcgaggcgtgcgggttcctgcac
cagttcgacaaggcccgcatgcccgtctgccgcttcttccgcgacttcggcgagtgccgc
gagcccgactgcgcgtacaagcactcgtacgacgatgtcaaggagtgcaacatgtacaag
atgggtttttgtcccaatggtcctaattgccggtacaagcatatcaagctacctgggcca
ccgccttctgttgaggaagttcttcagaagattttgcagatgcgctctttcaacagatac
ggtcaaaatagaaataataattataatcagcagggggagagaccccaacatccacagggt
tctgggatgcctaaccaaaattcggcagaaaatgctactgctgtggctccaccagctggt
ggacaacaagcacaaatgctgaatcaacagccaccgcagcagcagcagcagcagaagcca
aatacaaatgaccaggcccaaggtgtttcaaatggccatcaggccactagaattgccaca
ccccttccacaaggaccatctaggtacttcattgttaaaagttgcaatcgggagaatctg
gaaatatcagttcaacaaggaatttgggccacacagaggagtaacgaggctaaactcaat
gaagcttttgaatccactgagaatgttattttgatattctcaattaatagaactcgcaat
ttccaggggtgtgcaaagatgacttctaggattggtggctacattggtggtggaaattgg
aaatctgctcatggaacagcacattatggtcggaacttctctatgcagtggcttaagctt
tgtgagttgtcatttcagaaaacccatcatctccgcaatccatacaatgataacctccct
gttaagatcagcagagattgccaggaactagaacctttcattggtgagcagttggcttct
ctgctttatctggagccagacagcgaacttacggctatgctaattgcagcagaggccaag
cgagaggaggaaaaagcaaagggagtcagtgctgacgaggcagctgataatcaagatatt
gtgctgtttgatgacaatgaagaggatgaggaagaggaaagcgaggaggaggaagaaggc
aacggccaagagtctcaagggaggggaagaggaagggggatgatgtggccgcctcaaatg
ccaatgatgcgtgggccaatgatggcagggcgtggcttccctcccaacatgatgggtgat
ggctttggtttcggtggcggttttggcatgcctgatccttttggcatgccacgcggcttc
ccaccatttgttggcccaaggttccctggggactttgctagaggcccgatgcccgggatg
ggcttccctggcaggcctccgcagcctttccctctgggtcttgacatgatgatgggccct
ggccgtggtccactgatgggaggcatgggaatgggaggacctggacggcctaatcgcccc
atgggtatggcgcccttcgtgcccccaccacctccaaataaccgtgctgcgaagcgagaa
cagagaaggccagggggtgaccgtggggacaggttcgaaacagcgtcatcagaccagggc
agcaggggccatgataacactggaaactctggaacagatggggccagagcccagtctgga
gacaggtacggtagaagcgcccttcgggacgatgacagcgagagtgaagaggaggcggct
cccaggcggtcaaggaaacgatag
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