Miscanthus floridulus: 136521837
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Entry
136521837 CDS
T10264
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mflo Miscanthus floridulus
Pathway
mflo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136521837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136521837
03036 Chromosome and associated proteins [BR:
mflo03036
]
136521837
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
136521837
Coactivators
SAGA/TFTC/STAGA complex
136521837
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
136521837
STAGA complex
136521837
TFTC complex
136521837
SAGA complex
136521837
SLIK complex
136521837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
RecX_HTH3
PALB2_WD40
WD40_like
Cytochrom_D1
VPS8_N
Motif
Other DBs
NCBI-GeneID:
136521837
NCBI-ProteinID:
XP_066371696
LinkDB
All DBs
Position
18:complement(109477541..109487390)
Genome browser
AA seq
657 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRLSTSATSDVALARSDNDPARYHDGYSRL
RTWACSSLDQHKHELLRVLYPVFIHSFMDLVAEGLMQEARSFFHTFREDHEVMHSRDLQM
LEGVLSPSHLEEMELARSFRKNKFKIKLCEYSYELLLQYLQKTQALVVLGVINEHITFEV
SPGQPSLISDDADVVALIGTSKDLAKQINQKEVHWGLLEDSVEERMEKALAESDKIEAES
KDADAEDNKKRNAEGGKQGASLKKAKKDKLVGATGKNVRTETSMVSVAPRVKPELTLPAT
PLEVEQSILEDLRNRAQLNSVALPSVSFYTFVNTHNGLNCSSISHDGSLVVGGFSDSSVK
VWDMSKIGQPAKMSSSQSENGSSQGERISTLDEGKRTYTLFQGHSGPVYSAAFSPFCDFL
LSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKIQ
PLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMS
PDGRYMASGDEDGTIMIWDLSTGRCVSPLLGHSSCVWTLAFSCEGALLASGSADCTVKLW
DVASSTKTLKTEDTKGSSANRLRLLKALPTKSTPVYSLRFSRRNLLFASGVLSLNSS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcgcaaggggttccgc
ctcaccgagcttgcgctccaggaggagcgcaaccgcctctccacctccgccacctccgac
gttgcgcttgcccggtctgacaatgatccagcaagataccatgatggatatagcagatta
agaacatgggcatgtagttctcttgatcaacataagcacgaattacttcgcgtcctttac
ccagtttttatccatagcttcatggatctagtggcagagggacttatgcaggaagcgcgg
tcatttttccatacatttcgggaagatcatgaggtgatgcattcaagggatcttcagatg
ctggaaggcgtcctctctccttcacacttggaggaaatggaactggcccgatcttttagg
aaaaataaatttaaaattaaattatgcgagtattcgtatgaattgcttctccagtatctc
cagaaaacacaagcccttgtggtgcttggagtaatcaatgagcacataacttttgaagta
tctcctgggcagccctcattaatctctgatgatgctgacgttgttgctctgattgggaca
agcaaggacttggcaaaacagataaatcagaaggaagtacattgggggttgcttgaagat
tctgttgaagagcgaatggagaaggcactagcagaatctgataaaatagaagctgaaagc
aaggatgctgatgcagaagataacaagaaaagaaatgcagaaggtggaaagcaaggtgct
tctcttaagaaggccaaaaaggacaagcttgtaggtgcgactggaaaaaacgtcagaact
gaaacaagcatggtttctgtggcacctcgagtgaaaccggagctaactctcccagcaacg
cctcttgaagttgaacaatcgattcttgaggacctgcgaaaccgtgcacaactgaatagt
gtggcattgccatctgtcagcttctacacattcgttaatacacataatggattaaactgt
tcatcaatatcacacgacggatcgctggttgttggtgggttttctgattcgtcagtgaag
gtctgggatatgtcaaagattggccaaccagcaaaaatgtcaagttcacagagtgagaat
gggtcttcccagggtgagcgcatatcgacattagatgaggggaaaagaacctatacacta
tttcaaggccattctggaccagtttattctgcggcctttagcccgttttgtgatttcctc
ttatcatcatcttcagactcgacaataagactatggagcaccaagctgaatgccaatctt
gtctgttacaaaggacacaactacccggtttgggatgtccaattcagcccagttgggcat
tactttgctagtgcttcacacgacaggactgctagaatttggtcaatggataaaatccag
cctttgcgaataatggctgggcatctttctgatgttgattgtgtccagtggcatgtaaac
tgtaactacattgccaccggctcgagcgataaaactgtaagactctgggatgttcagacg
ggtgaatgcatacggatgtttattggtcataggagtatggttttatcactggcaatgtca
cctgatggacgatacatggcctctggagatgaagatggaacaatcatgatatgggatctc
tcgactggccgttgtgtttcaccactactaggacacagttcttgtgtgtggacacttgct
ttcagttgtgaaggagcattgcttgcatcgggatcggccgactgtactgtaaagctctgg
gatgtcgcttccagcacaaaaaccctgaagacagaggacaccaaaggcagctcagctaac
cgactgagactgcttaaagctctccctacaaaatcaactcctgtttatagcctgcggttt
tctcggaggaaccttctatttgcctctggtgttctctcgctaaactcgtcgtaa
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