Miscanthus floridulus: 136522076
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Entry
136522076 CDS
T10264
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
mflo Miscanthus floridulus
Pathway
mflo04120
Ubiquitin mediated proteolysis
mflo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
136522076
04120 Ubiquitin mediated proteolysis
136522076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mflo04121
]
136522076
Enzymes [BR:
mflo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
136522076
Ubiquitin system [BR:
mflo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
136522076
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_Vps41
zf-RING_16
zf-RING_11
zf-RING_5
zf-HC5HC2H
U-box_ZFPL1
Motif
Other DBs
NCBI-GeneID:
136522076
NCBI-ProteinID:
XP_066371960
LinkDB
All DBs
Position
18:complement(53026743..53033542)
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AA seq
500 aa
AA seq
DB search
MIRLQTYAAFSLLATASAAYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRLFLGSLRETEVERLNEQAWREVVEILFAVTIFRQDFSVSFLAMVAALLLIKALHWLA
QKRVEYIETTPSVPLLSHIRIVSFMAFLLIVDCLFLSNSLRSLIQKREASVAIFFSFEYM
ILATSTISTFVKYVFYVSDMLMEGQWERKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATAEELNASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRSASARQHGGQPAAGTDTPAS
EGAPGDNMSRRQAKLEAAAAAASLYGRSFVYPPANTLNRSGPESTSSTPQSEASNSNQSQ
KDQELQIQNSSDGLAPSPFSANGAIGSGPSTSNVENSLQKAQENFMKGQIEMLQIQLQMI
RRGAAVSVINNENDEHKRND
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtcttcagacgtacgcggcgttcagcttgctggcgacggcttcggcggcgtac
tacgccttcagcagccgggagcagttctacccggccatggtctacctctccacatccaag
atctgcttcgttctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctc
gtcaagcgcctcttcctggggtcgctccgggagaccgaggtcgagcgcctcaacgagcag
gcctggcgggaggtcgttgagatcctcttcgcggtcaccatcttccgtcaggacttctca
gtctctttcctcgccatggtcgccgcgctgctccttatcaaggcactgcactggctggcc
cagaagagggtcgagtacatcgagacaacaccttcagtgcccttgctctcacacatcagg
atcgtctctttcatggcgttcctcctcattgttgactgcctcttcctgtccaactcgctg
aggtcactcatacagaagcgggaggcatctgttgccatcttcttctcctttgagtatatg
atactagcaacatcgacaatatcaacatttgtgaagtatgtattctatgtcagtgacatg
ctaatggaaggtcaatgggagaggaaggcagtgtatacattttacttagagctgatcagt
gaccttgtgcacttgtcactatacatgctcttcttcatagctatcttcctgaactatggt
gtcccactgcacttgattcgtgagttatatgagaccttccgcaacttcagaattcgcatt
gcagattatgtacgctacagaaagatcacttccaacatgaatgaacgctttccagatgct
acagcagaagagctcaatgcgagcgatgctacatgtattatttgccgtgaggagatgact
acagcaaagaaactgctttgtgggcatctgttccatgtgcattgtttaaggtcatggcta
gagcgccaacacacttgccctacatgcagagctccaattattcccccagacaatggacgt
tctgcatcagcacgacaacatggaggtcaacctgctgcaggtactgacactccagcctca
gaaggggcaccaggtgacaatatgagcaggcgccaagcaaaactcgaagctgctgcagca
gctgcttctttatatggaagatcttttgtttatcctccagcaaacaccctaaataggtca
ggtcctgagtctacatcaagtacaccacaatctgaagcaagtaactccaatcaatcacag
aaagaccaagaactccagatccaaaactcaagtgatggtttagcaccttcgccttttagc
gcaaatggtgccattggttcaggaccaagcaccagcaatgttgaaaattcactgcagaag
gcacaggaaaactttatgaagggccagatagagatgttacaaatccaacttcaaatgatt
cggcgtggtgctgctgtgtcggtgattaacaatgagaatgacgagcacaaaaggaatgac
tga
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