Miscanthus floridulus: 136522184
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Entry
136522184 CDS
T10264
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136522184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136522184
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136522184
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
136522184
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF6514
DUF5646
DUF4407
Motif
Other DBs
NCBI-GeneID:
136522184
NCBI-ProteinID:
XP_066372075
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Position
2:39238574..39258793
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AA seq
864 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVCDLESQIDNFEAEIEGLSIKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSSLVKGVVSVSTTPVLSTKSSVATSPTQPTVSTTPSQSTSQDQTEETASQE
NNPESAPQTPPPKGGNPGPSVPAVPIAVSTGSAAVSVPAETINSPVRPTVPTTAAAILSS
AIPRSAPENTPAVTSIPANLSTTLKDDESMSFPPRRPSPAITEIGIGRGIARGITSSQAL
GTAPITIGPVPGNGSVSALPAINDLSKRNILNTDEKINSGGLSQQLVTPLGSKVQPQLVP
RTNDAISSDSANPNENPILGGSVFSPPVVSGVQWRPQAAATFQNQSETSQFRGRPEISAD
HREKYIQRLQQVQQQGGSLLNVSHITGINQKQFPTQQPNPLLQQFNSQSSSISSQVNLGL
GVQGSDAGHIKSEEQQILAEDVGVESSATTGANKQTSEDDTKIPYSNPSAPAAESTQLPR
DTDLSPGQPLQPGMSSSGVGVIGRRSVSDLGAIGDNLTGTSASSGHDQLYNMQMLEAAFH
RLPQPKDSERAKTYIPRHPAVTPASYPQIQAPIVSHPTFWERIGSDTLATDMLFFAFYYQ
QNTYQQYLAARELKKQSWRFHRRYNTWFQRHVEPQVTTDEFERGSYVYFDFHVTEDGSGW
CQRIKNDFTFEYNFLEDELSVQTN
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagccggaagctgcagggcgagatcgaccgcgtcctcaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacactgagaatgccaaccag
aaggagaagttcgaggcggacctcaagaaggagatcaagaagctgcagcggtacagggac
cagatcaagacgtggatccagtccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctgatggatgcccgaaagcagattgaacgagagatggaacgatttaaagtt
tgtgagaaggaaacaaaaactaaggccttctcaaaagaagggttaggtcagcaaccaaaa
acagatcccaaagaaaaggccaaagctgaaacaagagactggcttaataatgtggtttgt
gatttggaaagccagattgataactttgaagcagagattgaagggctttcaattaaaaag
ggaaagcaaagaccgcctcgactggtacatttagagaagtctattacgagacataaagct
catataaagaaattggagtcaatcttgagacttttggataatgatgagttgagtcctgag
caagtcaatgatgttaaagatttccttgatgactatgttgaacgtaatcaggaagacttt
gatgaattcagtgatgttgaggacctctatagcacattgcctatggagaaggttgaagca
cttgaagacatggtttcacttgctccttctagtcttgtgaagggtgttgtttctgtttcg
accactccagttttgagcacaaagagttcagttgcaacttcacctactcagcctacagta
tcaacaactccttcacaaagtacatcacaagatcaaacagaggagacagcttcacaagaa
aacaatcctgaatctgcgccacaaacaccacctccaaaaggtggaaatcctggaccttca
gtaccagctgtgcccattgctgtcagtactggtagtgcagctgtttctgtacctgcagaa
acaattaattcccctgtgcgaccaactgttcccaccacagcggctgcaatactttcttct
gctattccacgaagtgctcctgagaatacgcctgctgttacctcaattcctgcaaactta
tctaccaccttgaaggatgatgaaagcatgagttttcctccacgacgaccatctcctgct
attactgaaattggaattggcaggggcatagctcgaggaataactagtagtcaggcatta
ggtacagctcccataactattggtccagtcccaggaaatggatcggttagtgcacttcct
gcaataaatgacttgtccaaaagaaatatattgaacactgacgagaagattaacagtggt
ggtctttctcagcagttggttactcctcttggcagtaaagttcaaccccagctggttccc
aggactaatgatgcaattagctctgattctgctaacccaaatgaaaaccctattcttggt
ggaagtgtattttctcctccagttgtttctggggttcaatggagacctcaagctgctgct
acatttcaaaatcaaagtgaaactagtcaatttcgtggaaggcctgagatttctgctgat
cacagggagaagtacatacaaagactgcagcaagtacagcagcaaggtggcagccttctg
aatgtttctcatataactggcataaatcagaagcaatttccaacacagcagccaaatccc
cttctacaacagttcaattcacagagttcctctatatcttcccaagtgaatcttgggctt
ggagttcaaggatcagatgctgggcatataaaaagtgaagaacaacaaattttggctgaa
gatgttggtgtggaatcttccgcaacaacgggagcaaataaacaaacaagtgaagatgac
acaaagattccatattcgaatccttcagcacctgcagcagaaagcactcagctgcctagg
gatactgatctatcacctgggcagcctttgcaacctggaatgtcatcatctggtgttggt
gttatcggccgaagaagtgtatctgaccttggtgcaatcggagataaccttaccggaact
tctgctagttcaggtcatgatcagctttataatatgcaaatgctcgaagctgcattccac
aggcttccacagcccaaggactccgagcgtgctaaaacttacattccgcggcaccctgca
gttacccctgctagttacccccaaattcaggcaccaattgtatcacatcctaccttttgg
gaaagaattggtagtgacacattagctactgacatgctgttctttgcgttctactaccaa
cagaacacataccaacaatacttggctgctagagaactgaagaagcaatcatggagattt
caccggaggtacaatacctggttccagcggcatgtggagccacaggtcacgactgatgag
tttgagcggggatcatatgtatactttgatttccatgtcaccgaggatggctcaggatgg
tgccaaagaatcaagaatgacttcacatttgagtacaacttcctggaggatgagctatca
gtacaaacaaactag
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