Miscanthus floridulus: 136525314
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Entry
136525314 CDS
T10264
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136525314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136525314
03012 Translation factors [BR:
mflo03012
]
136525314
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136525314
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136525314
Translation factors [BR:
mflo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
136525314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
NACHT
RsgA_GTPase
ABC_tran
T2SSE
Motif
Other DBs
NCBI-GeneID:
136525314
NCBI-ProteinID:
XP_066374415
LinkDB
All DBs
Position
2:62757457..62769831
Genome browser
AA seq
994 aa
AA seq
DB search
MSYRGGRGGGGPNSHCGRGRGRGRGGGGGRGGRGGGGGGRGEQRWWDPEWRSERLRQMHG
DVEKVDENEWWNKIGQLREGSQQELVVKQNFGRDGQNILANMAQRQGLYFNAYNRGKTLV
FSKVPLPDYRADLDDRHGSTQKEIKMSNQTEVRVEDLLSRSKWNTNNSASTSTVSMRQFL
PSASSSVVEPAAPIDKEKLSSQLRDLQNSRKTTASARSMQSFREKLPAFSMREEFLKAVA
ANQVLVISGETGCGKTTQLPQFILEEEINNLRGSDCSIICTQPRRISAVSVAARVAAERG
EELGEAVGYQIRLESKRSAQTRLLFCTTGVLLRRLVQEPDLIGVSHLLVDEIHERGMNED
FLIIILRDLLPRRPDLRLVLMSATINAELFSKYFGDAPVMHIPGFTFPVAELFLEDVLEK
TRYRINSERDNFAGSSRRKRFSSVKSDPLSDVFENIVINKEYGNYNITTRQSLEAWSAAE
LDLSLVESTIEYICRYEAEGAILVFLTGWDEISKLLDKIKGNNFLGSPNRFLVLPLHGSM
PTVNQREIFDRPPASMRKIVLATNIAESSITVDDVVYVIDCGKAKETSYDALNKLACLLP
SWISKASAHQRRGRSGRVQPGFCYRLYPKIIHDAMPQFQLPEILRTPLQELCLTIKSLQL
GAVSSFLAKSLQPPDPLSVKNAIELLKTIGALDDTEELTSLGRHLCTLPLDPNIGKMLLM
GSVFQCLDPVLTIAAALAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALLKAFVAWKE
AKRSGRERTFCRENFLSSMTLKMMDDMRNQFFDLLSDIGFVSKATGVKAYNHYGNDLEMI
CAVLCAGLYPNVVQCKRRGKRTAFYTKDVGKVDIHPSSVNAFVNQFPLPFLVYSEKVKTA
SIYVRDSTNISDYALLLFGGSLSPSKTGEGIEMLGGYLHFSAPKHTIELIQKLRGELDIL
LQKKIEEPGLDIFSQGKGVVAAAVELLHSQNFNH
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtaccgcggagggcgcgggggcggcgggcccaactctcactgcgggcgcgggcgc
gggcgcgggcgcggcggtggcggaggcaggggaggccgcggcggcggcggcgggggacgc
ggggagcagaggtggtgggacccggagtggcggtccgagcgcctccggcagatgcatggg
gatgtggaaaaggttgatgagaatgaatggtggaacaagattgggcaattaagagaaggg
tcccagcaggagctagtagtcaagcagaattttggacgggatggacagaatatacttgca
aacatggctcagagacaagggctttactttaatgcatacaacagagggaagacacttgtt
ttcagcaaggtacccttacctgattatcgagcagatctggacgacaggcatgggtcaaca
caaaaagagattaagatgtctaatcagacagaggtgcgagtcgaagaccttttgtccagg
tcaaagtggaacaccaacaattctgcaagcacatctactgtctcaatgagacaatttttg
cctagcgcatcctcgtctgttgttgaaccagcagcaccaattgataaagaaaagctcagt
tctcagcttagggatttgcagaattcaaggaagacgacagcaagtgctagatcaatgcaa
tctttcagggagaaattacctgcattcagcatgagagaggaatttctgaaagcggtggca
gccaatcaggttctggtcatttctggcgagacaggctgcggtaaaacaacccagcttcca
cagttcatactagaagaagaaataaataacctccgcggttctgactgcagcataatttgt
actcagccccgccgtatatctgctgtttcagtagcagcaagagtagctgctgagagaggt
gaagaacttggcgaggctgttggataccagattcgccttgaatcaaaacgatctgcacaa
acacggttgctgttctgcactaccggagttttgcttagaagactggttcaagagcctgac
ttaattggggtgagtcatttactagttgacgaaattcatgaacgcggcatgaatgaagat
tttctcatcataatactgcgtgaccttctaccaagacgtccagatcttcgccttgtactg
atgagtgcaactataaatgctgaactattttccaagtactttggagatgctccagtgatg
cacatcccggggttcacttttcctgttgctgagttgtttctggaagatgttctagaaaag
actcgttacaggatcaattccgaacgtgataattttgcaggtagttcaaggagaaagagg
ttttcatcagttaagagtgatccactgtctgatgtttttgagaacattgtcattaataag
gagtatggaaattacaacattacaacaaggcagtcccttgaagcttggtctgctgctgaa
ctagatttgagccttgtggaaagtacaatcgagtatatttgccgttatgaagcagaaggt
gcaatccttgtgttccttactggctgggatgaaatttcaaagcttctggacaagattaaa
gggaataatttccttggcagtcctaatagatttcttgttcttcctttgcatggttctatg
ccaactgtgaatcaacgtgaaatttttgacagaccaccagctagtatgagaaaaattgtt
ttggcaaccaacattgcggagagtagtatcactgtagatgatgttgtctatgtgattgat
tgtggtaaggccaaggagacaagctatgatgccttgaataagctggcatgccttcttccg
tcatggatatcaaaagcttctgctcatcagaggagaggtcgctcaggccgcgttcagcca
ggcttttgctatcggctctatccaaagatcattcatgatgcaatgccacagtttcagttg
cctgaaattctcaggactcctttgcaagaactatgccttaccatcaaaagcttacagctt
ggagcagtatcctcctttttagccaagtcactgcagccaccagatccactttctgttaag
aatgcaattgagcttcttaaaaccattggtgcactggatgatacggaggaactcacttct
cttgggagacatctctgtactctcccactggacccaaacattgggaaaatgctgcttatg
ggatctgtattccagtgcttggatccagtattgacaattgctgctgctctcgcatatcgt
aatccatttgtgctcccaatagatagaaaagaagaagctgatgctgtcaaaagatcattt
gctggtgactcctgcagtgaccacattgctcttcttaaggcgtttgtagcatggaaggag
gctaaaaggagtggtagagagcgcactttctgtagggaaaattttctgtcctccatgacc
ctgaagatgatggatgacatgcgaaatcaattttttgatctactatctgatattgggttt
gttagcaaggcaacaggagtgaaggcatataaccactatggtaatgatctggagatgatt
tgcgctgttttatgcgcggggctttacccaaatgttgtgcaatgcaaaaggcgaggcaag
aggactgctttctacaccaaagatgtggggaaagtggatattcatccatcatcagtcaat
gcattcgtaaaccaattcccattacctttcttggtttatagtgagaaggtgaagactgct
agcatttatgtaagggactcgacaaatatatcggactatgcccttctactttttggtggt
tcgcttagtccgagcaaaactggagaaggcattgagatgcttgggggttatcttcatttc
tcggctccaaagcataccatagagttgattcagaaattaagaggtgaattggacatactc
cttcagaaaaagattgaggaacccggacttgacatcttttcacaaggaaagggtgtcgtg
gcggcagctgtagaactgttacacagtcaaaatttcaaccattag
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