Miscanthus floridulus: 136526742
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Entry
136526742 CDS
T10264
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
mflo Miscanthus floridulus
Pathway
mflo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
136526742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136526742
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136526742
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
136526742
RNA polymerase I system
136526742
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
136526742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
Spt5-NGN
KOW4_SPT5
KOW6_SPT51-2
KOW
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Ribosomal_L19
Motif
Other DBs
NCBI-GeneID:
136526742
NCBI-ProteinID:
XP_066375419
LinkDB
All DBs
Position
19:29750911..29759663
Genome browser
AA seq
1040 aa
AA seq
DB search
MARRDHDDDDEIEEEDEEEAYDLDEEEEEDEEDDYEEEARRGKASRGGGGRKRSREDNFI
DDSAIEDEDEDDDDDDGGGRPRKKGGGGVRGFFDEEAQVDEDEEEEDEGEGEDDFINDAG
ADLPDENVIRGSRRHSIPMRDEEEDIDEIERQVRERYARSTHIEYGEEAAEVEQQALLPS
VKDPKLWMVKCAIGHERETAICLMQKYIDRTDLQIKSVVALDHLKNYIYVEAEKEAHVKE
ACKGLRNIYASAKITLVPIKEMADVLSVESKSVDLSRDSWVRMKLGIYKGDLAKVVDVDN
VRQRVDVKLIPRIDLQALASKLEGREAVKKKAFVPPPRFFNIDEAREMHIRVERRRDKES
GEYFEWVDNLKFKDGFLYKSVSTKSIHTNNIQPTFDELEKFKKPGEDMNGDMASLSTLFA
NRKKGHFMKGDAVIVVKGDLKNLEGWVEKVEDETVHIRPKISDLPKTLAFNEKELCKYFK
PGDHVKVISGVQEGATGMVVKVEGHVLIILSDTTKEHIHVFADHVVESSEITTGITRIGD
YELHDLVLLDNLSFGVIIRVEAEAFQVLKGVPDRPEVVLVKLREIKSKIDRRSSAKDRSN
NIISAKDVVRVIEGACKGKQGPVEHIHKGILFIYDRHHLEHAGFICAKAQSCLLVGGSTG
GRRGNGMDTADARLGALRSSASILQSPGRLPPRGPIMNYGGRFGGGRGGRGHDALVGKCI
KIKSGPYKGYRGRVKEVTGALVRVELDSLMKIVTVKRDDIADTPTVATPFREPRYSLGGE
TPMHPSRTPHHAYQTPMRDPGATPIHDGMRTPMRSRAWAPMSPPRDNWEDGNPATWGSSP
AYQPGTPQARPYEAPTPGSGWANTPGVSFNDAPTPRDNYANAPSPYVPSTPVGQPMTPNS
AAYLPGTPGGQPMTPGNVGMDIMSPIIGGEGDGTWLLPDVLVNVLRGGDDGPGVVREVLG
DGSCRVALGSSGNGDMVTVLPNEVEVIRPKKSDRIKILNGNFRGYTGKLIGIDGSDGIVR
LDDTYEVKILDMVILAKLAT
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggctcgacgcgaccacgacgacgacgacgagatcgaggaggaggacgaggaggaggcc
tacgacctggacgaggaggaagaggaggacgaggaagacgactacgaggaggaggcgagg
cgcgggaaggcctcccgcggcggcggcgggcggaagcggtcgcgcgaagacaactttatt
gacgactcggccatcgaggatgaggacgaggatgacgacgacgacgacggcgggggccgg
ccgaggaagaagggcggcggcggggtgcgagggttcttcgacgaggaggcccaggtcgac
gaggatgaggaagaagaggacgaaggcgagggcgaggacgattttattaatgatgctggg
gccgaccttcctgatgagaatgttattaggggctcaagacgtcattctattcctatgagg
gatgaggaagaggacattgatgaaattgagagacaagtgcgggagagatatgcaagatcc
actcatattgagtacggtgaggaagcagcagaagtggaacagcaagctctgctgccctcc
gtgaaggatcctaaactatggatggtcaaatgtgcgattggacatgagagagagactgcg
atttgtctgatgcaaaagtacatcgataggacagaccttcagataaagtcagtcgtggca
ttggatcatctaaaaaattatatttatgttgaagctgaaaaggaggcccatgtcaaagag
gcttgcaaaggtctacgaaacatttatgcttcagcaaaaataacattagtaccgataaaa
gaaatggcagatgtcctctctgttgagagcaaatctgttgatctttcaagggattcttgg
gtccgaatgaaattgggcatatataaaggtgaccttgctaaggttgttgatgttgacaat
gtacgtcaaagagtagatgtgaagctgatccctagaatagatctacaagctttggctagt
aaactggaagggagggaggctgtaaagaagaaagcatttgtcccaccaccacgattcttc
aatatcgatgaggcgagggagatgcatattcgtgtggaacggaggcgagataaagaatct
ggggagtactttgagtgggttgataatttgaagttcaaagatggtttcttgtacaaatca
gtctccactaaatcaatccacacaaataatattcaaccgacttttgatgagcttgagaag
tttaagaagcctggtgaagacatgaatggcgacatggctagcttgtccactctgtttgca
aacaggaaaaaagggcactttatgaagggtgatgccgtcattgttgttaaaggcgatttg
aaaaatctggaggggtgggttgagaaagtagaggatgaaaccgttcacatcagaccaaaa
atatctgatcttccgaaaacattagccttcaatgaaaaggaactttgcaaatatttcaag
cctggtgaccatgtcaaggtgatctcaggtgttcaagaaggtgctactggcatggttgtt
aaagtggaagggcatgtcttgataattttgtctgacacaactaaagaacatatccatgtg
tttgctgatcatgtcgtcgaaagctctgaaattaccacaggaatcaccagaattggtgat
tatgaactgcatgatcttgtccttttagacaacttgtcatttggagtaattataagggtg
gaagctgaagcatttcaggttctgaaaggagtgccagatagacctgaagttgtgctcgtg
aaattaagagaaataaaaagcaaaattgataggcgctcatcagctaaagatcgttctaat
aatatcatctctgcgaaggatgttgtaagggttattgaaggagcatgcaaggggaagcaa
ggacctgtggaacacatacacaaggggatactatttatctatgacaggcatcaccttgaa
catgcaggctttatttgtgcaaaagcgcagtcttgccttcttgttggtggatcaactggt
ggccgtcgaggaaatggtatggacacagctgatgcacggcttggtgctttgagatcttca
gcaagcattctgcaatctccaggaaggctgcccccaagaggacctattatgaattatggt
ggaaggtttggaggcggccgtggtggtagaggacatgacgccttggtgggtaaatgtata
aaaattaaatctggcccttataagggataccgtggccgtgttaaagaggtgactggtgca
ctcgtacgtgtagagcttgattcattgatgaagatcgtcacagttaaaagagatgatatt
gctgacacacctactgttgcgacaccattccgtgaacctcgttattcattgggcggtgaa
acaccaatgcacccgtctcgaacgccacatcatgcttatcagactccaatgcgtgaccct
ggagcaacaccaatacatgacgggatgcggactcccatgcgaagtcgagcctgggctcct
atgagccctccgagggataattgggaagatggaaatcctgctacttggggtagcagtcca
gcttaccagccaggaaccccacaagctcggccatacgaagcccccacacctggttcaggg
tgggcaaacactccaggagttagtttcaatgatgctcctactcccagggataactatgca
aatgccccaagtccatatgtgccttccacgcctgttggtcaaccaatgacaccaaactca
gctgcatatcttccgggcacacctggtggtcaaccaatgaccccaggcaatgttggaatg
gatataatgtccccgataataggtggtgagggtgacggtacatggctgttgccggatgtt
ttggtcaatgtgttgaggggaggtgatgacgggcctggtgtggttagggaagtactcggg
gatggatcttgccgagttgcacttgggtcgtcgggcaatggtgacatggtgacagtcctt
ccaaacgaggtcgaggtcatcaggccaaagaagagtgacaggatcaagatattgaatggt
aatttccgtggatacacaggaaaactcataggtatagatggttctgacggaatagtgagg
cttgacgacacatacgaagttaagatattagatatggtgattttggccaaactggcgact
tga
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