Miscanthus floridulus: 136527182
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Entry
136527182 CDS
T10264
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136527182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136527182
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136527182
Spliceosome [BR:
mflo03041
]
Complex C
Other components
Step II factors
136527182
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
AAA_22
HA2_C
DEAD
AAA_19
AAA_30
nSTAND_NTPase5
ABC_tran
AAA_16
SLFN-g3_helicase
ATPase_2
NAT10_TcmA_helicase
nSTAND3
Dynamin_N
Flavi_DEAD
T2SSE
AAA_29
NB-ARC
FtsK_SpoIIIE
AAA_33
PhoH
nSTAND6
Motif
Other DBs
NCBI-GeneID:
136527182
NCBI-ProteinID:
XP_066375897
LinkDB
All DBs
Position
19:complement(20327837..20339427)
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AA seq
751 aa
AA seq
DB search
METAALRPGPCRAHLAIYAHPAQTHASSPSGEEGTLAPWCPAAEPNAMPSPSPPPPVLPI
SEHEDEIVAAVDANPVVVVIGETGSGKSTQLSQILHRRGYTRRGAIAVTQPRRVAAVSVS
RRVAQELGVPLGDEVGYAIRFEDRTSERTCIKYLTDGVLLRESLSNPELKQYSVIILDEA
HERSLNTDILLGLMKRLIKDRASDLKVLITSATLDGLKVSKFFSGCPVLNIPGTLFPVEK
FYSTERPTNYIESSLRTAIDIHAKEPPGDVLIFMTGKDDIDKMVSKLEERIQNLEKGSCI
DALVLPLHGSLPPELQVRVFAPAPPNCRRFIVATNVAETSLTVDGVVFVIDCGYVKQRQY
NPSSGMYSLDVVQISRVQADQRAGRAGRTRPGKCYRLYPISIYQNEFLEATVPEIQRTSL
AGSVLYLKSLNLPDINILKFDFLDPPSRESLEDALRQLYLIDAIDENGQITDVGRVMAEL
PLEPSLSRTLIEANELGCLSQALTVASILSAEITLRSASKDMDGKRKRQELPDGSGWGDH
IQLLQIFESWDQSGYDPKWCSDHDLQVRSMKLSKDVRNQLCQIIKKIAKGSTDVHARKSQ
KSDPDYRKLRRALCVGYGNQLAERMLHHNGYHTVGYRTQLVQVHPSSVLEGDEYGKFPMY
VIYHELISTTRPYMRNICAVEQAWVEPILKKLEKLDENRLSGGSSAPKDSELLVENKQVN
SLKKDMDVKQSEVDSKIQAARERYLARKGKK
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggagacggcggcactgaggcccggtccgtgtcgggcccatttggccatctacgcacac
ccagcccaaacacatgcatctagcccaagcggagaagaaggcacgctagcgccctggtgc
ccggcggccgaaccgaacgcgatgccgtcgccatctccgccgccgccagtgctgccgatc
tcggagcacgaggacgagatagtcgccgcggtggacgcgaaccctgtggtggtggtcatc
ggcgagaccggctctggcaagagcactcagctctcacagatcctccaccgccgcggatac
acccgtcggggcgccatcgccgtcacccagccccgccgcgtcgctgcggtctccgtttcc
agaagagtagctcaagagcttggtgttccacttggggatgaagttggttatgcaatccga
tttgaggacagaacttcagaaagaacatgcataaagtacctcacggacggcgttctcctt
cgtgaaagcctttcaaatcctgagttgaagcaatactcagtaatcatactggatgaagct
cacgagcgtagtttaaacactgatatccttttaggtttgatgaaaagattgatcaaggac
cgagcctcagatttaaaagttctaatcacctctgcgactcttgacggtttaaaagtttcg
aagttcttctcaggatgccctgtgttaaacatacctggaactttgttccctgtggagaaa
ttttacagcactgaacgcccaacaaattatatagaatcttcactcagaacagctatagat
atccatgccaaggaacctcctggggatgtcttaatatttatgacaggaaaggatgatatt
gacaagatggtctcaaaattggaggaaagaattcaaaatcttgagaaaggctcctgcatt
gatgctcttgttcttcctcttcatggttctttgccacctgagctgcaggttagggtattt
gctcctgcacctccaaactgccgacgcttcattgttgcaacaaatgttgctgaaacttcg
ctgactgtagatggtgtcgtgttcgtgattgattgtggttatgtaaagcagcgccaatac
aatccatcaagtggaatgtattcacttgatgtagtccaaatcagcagagtgcaggctgat
cagcgagcagggcgagctggaagaactcggcccggcaagtgctataggctatacccaatt
tccatatatcagaatgagtttcttgaggcaacagttcctgaaattcaacgcacttctctt
gctggaagtgttctgtatctgaaatcgttaaatcttccagacatcaacatactgaagttt
gattttctagatccaccatcacgtgagtcattagaagatgctttgaggcaattatacctc
attgacgcaattgatgaaaacgggcaaataacagatgttggacgagttatggcagagctc
cctcttgaaccgtctctttcaaggaccttgattgaagcaaatgaattgggatgcctgtct
caggcattaactgttgcttcaattttgtcagcagaaatcacattgcgatcagctagcaag
gacatggatgggaagaggaaaaggcaggagcttcctgatggttctggctggggtgaccat
atacaattgcttcagatattcgaaagctgggaccaatctggttatgatccaaaatggtgc
tctgatcatgatttgcaggtgcggagtatgaaattgagcaaagatgtgaggaaccaacta
tgccagattattaaaaaaattgcaaaaggttcaactgatgtgcatgcaaggaaaagccag
aagagtgaccctgactatagaaagctgaggagagctctctgcgtaggatatggtaaccag
ctagctgagaggatgctgcatcacaatggctaccatactgttggctataggacccaactt
gtacaggtgcatccatcttctgtactggaaggtgatgagtatgggaagtttccaatgtat
gttatttatcatgagctgataagtacaactcgtccatacatgagaaatatctgtgctgtc
gagcaagcctgggttgagcctatattaaagaagcttgagaaattagatgaaaacagatta
agtggtggctcgagtgcaccgaaagattctgaacttctagtagagaataagcaagtgaac
tcgttgaagaaagacatggatgtaaaacaatctgaggtggacagtaaaatccaggcagct
cgagagcgctaccttgcacgaaaaggtaagaaatga
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