Miscanthus floridulus: 136527562
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Entry
136527562 CDS
T10264
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mflo Miscanthus floridulus
Pathway
mflo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136527562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136527562
03036 Chromosome and associated proteins [BR:
mflo03036
]
136527562
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
136527562
Coactivators
SAGA/TFTC/STAGA complex
136527562
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
136527562
STAGA complex
136527562
TFTC complex
136527562
SAGA complex
136527562
SLIK complex
136527562
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
NBCH_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
DSE1_N
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
CFAP251_N
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
PAC11
Beta-prop_NOL10_N
Beta-prop_SCAP
Beta-prop_WDR19_1st
ASA1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SPT8
Tricorn_2nd
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
SHKBP1_KCTD3_C
RecX_HTH3
Beta-prop_ACSF4
Beta-prop_IP5PC_F
PALB2_WD40
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
136527562
NCBI-ProteinID:
XP_066376434
LinkDB
All DBs
Position
19:91369454..91379050
Genome browser
AA seq
657 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRLSTSANSDVALARSDNDPARYHDGYSRL
RTWAYSSLDQYKHELLRVLYPVFIHIFMDLVAEGHMQEARSFFHTFREDHEVMHSRDLQK
LEGVLSPSHLEEMELARSFRKNKFKIKLCEYSYELLLQYLQKTQALVVLGVINEHITFEV
SAGQPSLISDDADVVALIGTSKDLAKQINQKEVHWGLLEDSVEERMEKALAESDKIEAES
KDADAEDNKKRNAEGGKQGASLKKAKKDKLVGATGKNVRTETSMVSVAPRVKPELTLPAT
PVEVEQSILEDLRNRAQLSSVALPSVSFYTFVNTHNGLNCSSISHDGSLVVGGFSDSSVK
VWDMSKIGQPAKMSSSQSENGSSQGERISTLDEGKRTYTLFQGHSGPVYSAAFSPFGDFL
LSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKIQ
PLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMS
PDGRYMASGDEDGTIMIWDLSTGRCVSPLLGHSSCVWTLAFSCEGALLASGSADCTVKLW
DVASSTKTLKTEDVKGSSANRLRLLKALPTKSTPVYSLRFSRRNLLFASGALSLSSS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcgcaaggggtttcgc
ctcaccgagctcgcgctccaggaggagcgcaaccgcctctccacctccgccaactccgac
gttgcgcttgcccggtctgacaatgatccagcaagataccatgatggatatagcagatta
agaacatgggcatatagttctcttgatcaatataagcacgaattacttcgcgtcctttac
ccagtttttatccatatcttcatggatctagttgcagagggacatatgcaggaagcgcgg
tcatttttccatacatttcgggaagatcatgaggtgatgcattcaagggatcttcagaag
ctggaaggcgtcctctctccttcacacttggaggaaatggaactggcccgatcttttagg
aaaaataaatttaaaattaagttatgcgagtattcgtatgaattgcttctccagtatctc
cagaaaacacaagctcttgtggtgcttggagtaatcaatgagcacataacttttgaagta
tctgctgggcagccctcattaatctctgatgatgctgacgttgttgctctgattgggaca
agtaaggacttggcaaaacagataaatcagaaggaagtacattgggggttgcttgaagat
tctgttgaagagcgaatggagaaggcactagcagaatctgataaaatagaagctgaaagc
aaggatgctgatgcagaagataacaagaaaagaaacgcagaaggtggaaagcaaggtgct
tctcttaagaaggccaaaaaggacaagcttgtaggtgcgactggaaaaaatgtcagaact
gaaacaagcatggtttctgtggcacctcgagtgaaaccggagctaactctcccagcaacg
cctgttgaagttgaacaatcgattcttgaggacctgcgaaaccgtgcacaactgagtagc
gtggcattgccatctgtcagcttctacacatttgttaatacacataatggattaaactgc
tcgtcaatatcacacgacggatcgctggttgttggtgggttttctgattcatcagtgaag
gtctgggatatgtcaaagattggccaaccagcaaaaatgtcaagttcacagagtgagaat
gggtcttcccagggtgagcgcatatcgacattagatgaagggaaaagaacctatacacta
tttcaaggccattctggaccagtttattctgcggcctttagcccgtttggggatttcctc
ttatcatcatcttcagactcgacaataagactatggagcaccaagctgaatgccaatctt
gtctgttacaaaggacacaactacccggtttgggatgtccaattcagcccagttggccat
tactttgctagtgcttcacacgacaggactgctagaatttggtcaatggataaaatccag
cctttgcgaataatggctgggcatctttctgatgttgattgtgtccagtggcatgtaaac
tgtaactacattgccaccggctcgagcgataaaactgtaagactctgggatgttcagacg
ggtgaatgcatacggatgtttattggtcataggagtatggttttatcactggcaatgtca
cctgatggacgatacatggcctccggagatgaagatggaacaatcatgatatgggatctc
tcgactggccgttgtgtttcaccactactaggacacagctcttgtgtgtggacacttgct
ttcagttgtgaaggagcattgcttgcatcaggatcggctgactgtactgtaaagctctgg
gatgttgcttccagcacaaaaaccctgaagacagaggacgtcaaaggcagctcagctaac
cgactgagactgcttaaagctctccctacaaaatcaactcctgtttatagcctgcggttt
tctcggaggaaccttctatttgcctctggtgctctctcgctaagctcgtcataa
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