Miscanthus floridulus: 136527784
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Entry
136527784 CDS
T10264
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mflo Miscanthus floridulus
Pathway
mflo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
136527784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136527784
03036 Chromosome and associated proteins [BR:
mflo03036
]
136527784
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
136527784
Coactivators
SAGA/TFTC/STAGA complex
136527784
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
136527784
STAGA complex
136527784
TFTC complex
136527784
SAGA complex
136527784
SLIK complex
136527784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
RecX_HTH3
Beta-prop_IP5PC_F
WD40_like
PALB2_WD40
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
136527784
NCBI-ProteinID:
XP_066376719
LinkDB
All DBs
Position
19:115944648..115954482
Genome browser
AA seq
657 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRLSTSANSDVALARSDNDPARYHDGYSRL
RTWAYSSLDQYKHELLHVLYPVFIHIFMDLVAEGHMQEARSFFHTFREDHEVMHSRDLQK
LEGVLSPSHLEEMELARSFRKNKFKIKLCEYSYELLLQYLQKTQALVVLGVINEHITFEV
SPGQPSLISDDADVVALIGTSKDLAKQINQKEVHWGLLEDSVEERMEKALAESDKIEAES
KDADAEDNKKRNAEGGKQGASLKKAKKDKLVGATGKNVRTETSMVSVAPRVKPELTLPAT
PVEVEQSILEDLRNRAQLSSVALPSVSFYTFVNTHNGLNCSSISHDGSLVVGGFSDSSVK
VWDMSKIGQPAKMSSSQSENGSSQGERISTLDEGKRTYTLFQGHSGPVYSAAFSPFGDFL
LSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKIQ
PLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMS
PDGRYMASGDEDGTIMIWDLSTGRCVSPLLGHSSCVWTLAFSCEGALLASGSADCTVKLW
DVASSTKTLKTEDVKGSSANRLRLLKALPTKSTPVYSLRFSRRNLLFASGALSLSSS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcgcaaggggttccgc
ctcaccgagctcgcgctccaggaggagcgcaaccgcctctccacctccgcaaactccgac
gttgcgcttgcccggtctgacaatgatccagcaagataccatgatggatatagcagatta
agaacatgggcatatagttctcttgatcaatataagcacgaattacttcacgtcctttac
ccagtttttatccatatcttcatggatctagttgcagagggacatatgcaggaagcgcgg
tcatttttccatacatttcgggaagatcatgaggtgatgcattcaagggatcttcagaag
ctggaaggcgtcctctctccttcacacttggaggaaatggaactggcccgatcttttagg
aaaaataaatttaaaataaagttatgcgagtattcgtatgaattgcttctccagtatctc
cagaaaacacaagctcttgtggtgcttggagtaatcaatgagcacataacttttgaagta
tctcctgggcagccctcattaatctctgatgatgctgatgttgttgctctgattgggaca
agtaaggacttggcaaaacagataaatcagaaggaagtacattgggggttgcttgaagat
tctgttgaagagcgaatggagaaggcactagcagaatctgataaaatagaagctgaaagc
aaggatgctgatgcagaagataacaagaaaagaaacgcagaaggtggaaagcaaggtgct
tctcttaagaaggccaaaaaggacaagcttgtaggtgcgactggaaaaaacgtcagaact
gaaacaagcatggtttctgtggcacctcgagtgaaaccggagctaactctcccagcaacg
cctgttgaagttgaacaatcgattcttgaggacctgcgaaaccgtgcacaactgagtagc
gtggcattgccatctgtcagcttctacacatttgttaatacacataatggattaaactgc
tcgtcaatatcacacgacggatcgctggttgttggtgggttttctgattcgtcagtgaag
gtctgggatatgtcaaagattggccaaccagcaaaaatgtcaagttcacagagtgagaat
gggtcttcccagggtgagcgcatatcgacattagatgaggggaaaagaacctatacacta
tttcaaggccattctggaccagtttattctgcggcctttagcccgtttggggatttcctc
ttatcatcatcttcagactcgacaataagactatggagcaccaagctgaatgccaatctt
gtctgttacaaaggacacaactacccggtttgggatgtccaattcagcccagttggccat
tactttgctagtgcttcacacgacaggactgctagaatttggtcaatggataaaatccag
cctttgcgaataatggctgggcatctttctgatgttgattgtgtccagtggcatgtaaac
tgtaactacattgccaccggctcaagcgataaaactgtaagactctgggatgttcagacg
ggtgaatgcatacggatgtttattggtcataggagtatggttttatcactggcaatgtca
cctgatggacgatacatggcctccggagatgaagatggaacaatcatgatatgggatctc
tcgactggccgttgtgtttcaccactactaggacacagctcttgtgtgtggacacttgct
ttcagttgtgaaggagcattgcttgcatcgggatcggctgactgtactgtaaagctctgg
gatgttgcttccagcacaaaaaccctgaagacagaggacgtcaaaggcagctcagctaac
cgactgagactgcttaaagctctccctacaaaatcaactcctgtttatagcctgcggttt
tctcggaggaaccttctatttgcctctggtgctctctcgctaagctcgtcataa
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