Miscanthus floridulus: 136527948
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Entry
136527948 CDS
T10264
Name
(RefSeq) zinc finger CCCH domain-containing protein 45-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136527948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136527948
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136527948
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136527948
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
136527948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
TFIIA
Motif
Other DBs
NCBI-GeneID:
136527948
NCBI-ProteinID:
XP_066376912
LinkDB
All DBs
Position
19:96361799..96368413
Genome browser
AA seq
645 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDSVPAAGGGGPVPSSTDPGAGGGGGGDGPGMHGRGRGRGSYRQT
VCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNMYK
MGFCPNGPNCRYKHIKLPGPPPSVEEVLQKILQMRSFNRYGQNRNNNYNQQGERPQHPQG
SGMPNQNSAENATAAAPPAGGQQAQTLNQQPPQQQQKPNTNDQAQGVSNGHQTTRIATPL
PQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESTENVILIFSINRTRNFQ
GCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSMQWLKLCELSFQKTHHLRNPYNDNLPVK
ISRDCQELEPFIGEQLASLLYLEPDSELTAMLIAAEAKREEEKAKGVSADEAADNQDIVL
FDDNEEDEEEESEEEEEGHGQESQGRGRGRGMMWPPQMPMMRGPMMAGRGFPPNMMGDGF
GFGGGFGMPDPFGMPRGFPPFVGPRFPGDFARGPMPGMGFPGRPPQPFPLGLDMMMGPGR
GPLMGGMGMGGPGRPNHPLGMAPFMPPPPPNNRAAKREQRRPGGDRGDRFETASSDQGSR
GHDNTGNSGADGARAQSGDRYGRSALRDDESESEEEAAPRRSRKR
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacggcggactgagcttcgacttcgagggcggcctcgactccgtcccg
gcggccgggggcggggggcccgtgccgtcctccaccgaccctggcgcgggcggaggcgga
ggcggcgatgggccgggtatgcacgggcgtggccgaggtcgcgggagctaccgccagaca
gtgtgccggcactggcttcggggcctctgcatgaagggcgaggcgtgcgggttcctgcac
cagttcgacaaggcccgcatgcctgtctgccgcttcttccgcgacttcggcgagtgccgc
gagcccgactgcgcgtacaagcactcgtacgacgacgtcaaggagtgcaacatgtacaag
atggggttttgtcccaatggtcctaactgccggtacaagcatatcaagctacctgggcca
ccgccttctgttgaggaagttcttcagaagattttgcagatgcgctctttcaacagatat
ggtcagaatagaaataataattataatcagcagggggagagacctcaacatccacaaggt
tctgggatgcctaaccaaaattcggcagaaaatgctactgctgcggctccaccagctggc
ggacaacaagcacaaacgctgaatcaacagccaccacagcagcagcagaagcctaataca
aatgaccaggcccaaggtgtttcaaatggccatcagaccactagaatcgccacacccctt
ccacaaggaccatctaggtacttcattgttaaaagttgcaatcgcgagaatctggaaata
tcagttcagcaaggaatttgggccacacagaggagtaacgaggctaaactcaatgaagct
tttgaatccactgagaatgttattttgatattctcaattaatagaactcgcaatttccag
gggtgtgcaaagatgacttccaggattggtggctacattggtggtggaaattggaaatcc
gctcatggaacagcgcattatggtcggaacttctctatgcagtggcttaagctttgtgag
ttgtcatttcagaaaacccatcatctccgcaatccatacaatgataacctccctgttaag
atcagcagagattgccaggaactagaacctttcattggtgaacagttggcttctctgctt
tatctggagccagacagtgaacttacggctatgctaattgcagcagaggccaagcgagag
gaggaaaaagcgaagggagtcagtgctgatgaggcagctgataatcaagatattgtgttg
tttgacgacaatgaagaggatgaggaagaggaaagcgaggaggaagaagaaggccacggc
caagagtctcaagggaggggaagaggaagggggatgatgtggccgcctcaaatgccgatg
atgcgtgggccaatgatggcagggcgtggcttccctcccaacatgatgggtgatggcttt
ggtttcggcggtggtttcggcatgcctgatccttttggcatgccacgcggcttcccacca
tttgttggcccaaggttccctggggactttgctagaggcccgatgcccgggatgggcttc
cccggcaggcctcctcagcctttccctctgggtcttgacatgatgatgggccctggccgt
ggtccactgatgggaggtatgggaatgggcgggcctggacggcctaatcaccccttgggt
atggcgcccttcatgcccccaccacctccaaataaccgtgctgcgaagcgggaacagaga
aggccagggggtgaccgtggggacaggttcgaaacagcgtcatcagaccagggcagcagg
ggccatgataacactggaaactctggagcagatggagccagagcccagtctggggacagg
tatggtagaagtgcccttcgggacgatgaaagtgagagcgaagaggaggcggctcccagg
cggtcaaggaaacgatag
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