Miscanthus floridulus: 136528852
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Entry
136528852 CDS
T10264
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
mflo Miscanthus floridulus
Pathway
mflo04120
Ubiquitin mediated proteolysis
mflo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
136528852
04120 Ubiquitin mediated proteolysis
136528852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mflo04121
]
136528852
Enzymes [BR:
mflo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
136528852
Ubiquitin system [BR:
mflo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
136528852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
zf-HC5HC2H
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
136528852
NCBI-ProteinID:
XP_066377951
LinkDB
All DBs
Position
19:complement(47591420..47598259)
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AA seq
504 aa
AA seq
DB search
MIRLQTYAAFSLLATASAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRLFLGSLREAEVERLNEQAWREVIEILFAVTIFRQDFSVSFLAMVAALLLIKALHWLA
QKRVEYIETTPSVPLLSHIRIVSFVVFLLIVDCLFLSNSLRPLIQKWEASVAIFFSFEYM
ILATSTVSTFVKYVFYVSDMLMEGQWERKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATAEELNASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRSTSARQYGGQPGVQPAAGTD
TPASEGAPGDNMSRRQAKLEAAVAAASLYGRSFVYPPANTLNRSGPQSTSSTPQSEASNP
NQSQKDQELQIQNSSDGLAPLPFSAHGATGSGPSTSNLENSLQKAQENFIKSQIEMLQIQ
LQMIRHGAAVSVTNNENDEHKRND
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtcttcagacgtacgcggcgttcagcctgctggcgacggcgtcggcggtgtac
tacgccttcagcagccgggagcagttctacccggccatggtctacctctccacctccaag
atctgcttcgttctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctc
gtcaagcgcctcttcctggggtcactccgggaggccgaggtcgagcgcctcaacgagcag
gcctggcgggaggtcattgagatcctcttcgcggtcaccatcttccggcaggacttctca
gtctctttcctggccatggtcgccgcgttgctccttatcaaggcactgcactggctggcc
cagaagagggtcgagtacatcgagaccacaccctcggtgcccttgctctcacacatcagg
atcgtctccttcgtggtgttcctcctcattgttgactgcctcttcctgtccaactcactc
aggccactcatacagaagtgggaggcatcggttgccatcttcttctcctttgagtatatg
atactagcaacatcgacagtatcaacatttgtgaagtatgtattctatgtcagtgacatg
ctaatggaaggtcaatgggagaggaaggcagtatatacattttacttggagctgatcagt
gaccttgtgcacttgtcactatacatgctcttcttcatagctatcttcctgaattatggt
gtcccactgcacttgattcgtgagttatatgagaccttccgcaacttcagaattcgcatt
gcagattatgtacgctacagaaagatcacttccaacatgaatgaacgctttccagatgct
acagcagaagagctcaatgcgagtgatgctacatgtattatttgccgtgaggagatgact
acagcaaagaagctgctttgtgggcatctgttccatgtgcattgtttaaggtcatggcta
gagcgccaacacacttgccctacgtgcagagctccaattattcccccagacaatggacgt
tctacatcagcacgacaatatggaggtcaacctggtgttcagcctgctgcaggtactgac
actccagcctcagaaggggctccaggtgacaatatgagcaggcgccaagcaaaactcgaa
gctgctgtagcagctgcttctttatatggaagatcttttgtttatcctccagcaaacacc
ctaaataggtcaggtcctcagtctacatcaagtacaccacaatctgaagcaagtaacccc
aatcaatcacagaaagaccaagaactccagatccaaaactcaagtgatggtttagcacct
ttgccttttagcgcacatggtgccactggttcaggaccaagcaccagcaatcttgaaaat
tcactgcagaaggcacaggaaaactttataaagagccagatagagatgttacaaatccaa
cttcaaatgattcggcacggtgctgctgtgtcggtgactaacaatgagaatgacgagcac
aaaaggaatgactga
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