KEGG   Miscanthus floridulus: 136533627
Entry
136533627         CDS       T10264                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
mflo  Miscanthus floridulus
Pathway
mflo03013  Nucleocytoplasmic transport
mflo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    136533627
  09122 Translation
   03013 Nucleocytoplasmic transport
    136533627
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mflo03019]
    136533627
   03041 Spliceosome [BR:mflo03041]
    136533627
Messenger RNA biogenesis [BR:mflo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     136533627
Spliceosome [BR:mflo03041]
 Complex C
  Other components
   EJC/TREX
    136533627
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    136533627
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_HPS5 WD40_MABP1-WDR62_2nd Tricorn_2nd Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_DCAF12 Beta-prop_Vps41 Beta-prop_IFT140_1st NBCH_WD40 B-prop_COPA_B_2nd WD_LRWD1 MJ0548_N WDR90_beta-prop_4th IceA2
Other DBs
NCBI-GeneID: 136533627
NCBI-ProteinID: XP_066382275
LinkDB
Position
Unknown
AA seq 332 aa
MEKREDERKGSGGAAGTGGSTPGANLRDLVSREYYGHKKKVHSVAWNCLGTKLASGSIDH
TARVWSIDPHGHSKVKDIELKGHTDSVDQLCWDPNHPDTVATAAADKSIRLWDARSGKCQ
VVELSGENINITYKHDGTQIAVGNKEDELTILDVRTLKVAKKHKSTYEVNEIAWNKAGDL
FFITTGLGHVEVVKDLEFLKPCKLNAHTAGCYCIAMDPVDRYFAVGSADSLVSLWNVKEL
LCIRTFTKLEWPVRTVGFNHTGEFIAYASEDPFIDIANVETGRSIHQIPCKAAMNSVEWN
PKYNLLAYAGDDKNKYMADEGVFRIFGFETHN
NT seq 999 nt   +upstreamnt  +downstreamnt
atggagaaaagagaagatgagaggaagggcagcggtggcgccgccggcaccggcggctcg
actcctggggccaacctaagggacctggtgtcgagggaatactacggccacaagaagaag
gtgcactctgtagcatggaactgcctaggcacaaagcttgcttcaggatcgattgatcat
accgcacgtgtctggagcatcgatccacatggccattctaaggttaaagatattgaactg
aaaggccacacggatagtgtagatcagctttgctgggatccaaatcatcctgatacagtt
gctactgcagctgctgacaagtctattcgtctttgggatgctcgaagtggaaaatgtcaa
gttgttgaacttagcggagaaaacatcaacatcacatataaacatgatggcactcagata
gctgttggaaacaaggaggatgagctgactatattggatgttaggacacttaaagttgct
aagaaacacaagtctacttacgaggtgaatgagattgcttggaataaagctggagatcta
ttcttcattactactgggttaggacacgttgaggtggttaaggatcttgagtttttaaag
ccctgcaaactgaatgctcatacagcagggtgttattgcattgcaatggatccagttgat
aggtatttcgctgttggaagtgcagattcacttgtcagtctttggaatgtcaaagagttg
ttatgcattagaaccttcacaaaacttgagtggcctgtaagaacagttggcttcaatcat
actggagaattcattgcatatgccagtgaagatcctttcattgacattgccaatgttgag
actggacgatcaattcatcagattccatgtaaagcagctatgaatagcgttgaatggaat
cctaagtacaatctcctggcctatgcaggagacgacaagaacaagtacatggctgatgaa
ggtgttttccggatatttggcttcgaaacacataactga

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