Miscanthus floridulus: 136533916
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Entry
136533916 CDS
T10264
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136533916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136533916
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136533916
mRNA degradation factors
5'-3' decay
Decapping complex
136533916
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
136533916
NCBI-ProteinID:
XP_066382534
LinkDB
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Position
Unknown
AA seq
580 aa
AA seq
DB search
MRGIRADGDGGGGGGGGPSSSSTAENSRFDAAQYSFFGKAPMQGAELGGLLDGGVDGDGG
GFGGPDDGSYQFSSTGEEIDCMSNLSEIDDLASTFAMLNRSISGTRNPGVIGDRRSISRE
SSLTADWAQDADFSNWVDQDILDGDESLDSKQWCSQLQSSPHFGESKPLSRTSSYPNQPL
QHRSSEPILLHRSTSFTSYPPPGGSPALPYPAQGLTRHSSIPSPGAGHHMGSPSSSLSGS
PYHMPGLSHGLPYGRSMSYTTGDLSMNNVLQNEWSNQAGPLAFDHLNRRPSLLQPQLSLP
SSSMSSLLFSQQHQRLPPGQPPLQNYINMQPHLFYHHQSPDVPSPRDKRSRSGRGKHNIR
FSQQPSDAGSQNSESSGIKFRSKYMSSEEIESILKMQHSANHSNDPYIDDYYHQACKAKR
SVTSQMSNFCPMSIKDFPSKSRSGVDQHSYLQVDANGGVSFSAIRRPRPLLEADLPGSGD
GFYDHKSSKRPLEKEPMLAARITVEDSLRLLLDVDDIDRFLQSSQPQDNSFQLKRRRQVL
LEGLATSLQLVDPFGPNKPGHSGGLAPKDDLIFLRIVSLP
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgaggggcattagggcggatggcgacggcggcggtggcggaggcggaggcccgtcctcg
tcttccaccgcagagaactcgcggttcgacgcggcgcagtactccttcttcggcaaggcg
cccatgcagggggcggagctcggtgggcttttggatggaggtgtcgacggcgatggtggc
ggattcggtggacctgatgatggtagctaccagttctcttctacaggcgaagagattgat
tgtatgagtaacttgtcggaaattgatgatcttgcaagcacttttgcaatgttgaaccga
agtattagtggaacaaggaatcctggcgttattggtgatagacgatcaatttcgagagaa
agttctttgactgctgattgggctcaagatgctgacttctctaattgggtagatcaggat
atactagacggtgatgaatccctggacagcaaacaatggtgctcgcagctgcaatcttcg
cctcactttggagagtctaaaccactgtctcgtacatcttcatatcccaatcaaccacta
cagcaccgctcaagtgaacctattcttttacacagatctacttcgtttacgtcctatccg
ccaccaggtggaagtcctgcattgccttatcctgctcaaggtcttacacggcactcaagc
attccatcacctggtgctggtcaccacatgggttctccgagttcatcgctttctggttcc
ccatatcatatgcctggtctatctcatggactgccttatggacgaagcatgtcttacacc
actggagatctgtcaatgaacaatgtcttacaaaatgagtggtcaaaccaagctggccca
cttgcttttgatcatcttaaccggcggcctagtttattgcagccacagttatcccttcca
agtagttcaatgtcttcattgcttttttctcagcagcaccagagattaccaccaggccag
ccgcctcttcagaattacataaacatgcagcctcacctattctatcaccaccaatctcct
gatgttccttcaccaagagacaagcggtcaaggtcaggaagaggaaagcacaacatacgc
ttttctcaacagccttctgatgcaggtagccagaatagtgagagttcagggataaagttc
agatccaagtacatgtcatctgaagagattgaaagtatcttaaaaatgcagcactctgca
aatcacagcaacgatccttacatcgatgactactaccaccaagcttgcaaagccaaaaga
tctgtaacttctcagatgtccaatttctgccctatgtcaataaaggacttcccctcaaaa
tcccggtctggtgttgatcagcattcatatctacaggttgacgctaatggaggagtttca
ttctctgccatacgtagacctcgccctcttcttgaagctgatttgcctggatctggtgat
ggtttttatgatcataagtcgtccaaaaggccactggagaaagagccaatgcttgcagcc
agaataaccgttgaagattctcttcgtcttcttctggatgtcgatgatattgatcgtttt
ttacagtctagccagccacaggacaacagtttccaactgaagcgaaggcgacaggtcctg
cttgaaggcttagctacatcgcttcagcttgttgacccttttggccccaacaaacctggc
cattcgggtgggttagcccctaaggatgacctaatttttcttcgtattgtttctctgccc
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