Miscanthus floridulus: 136534048
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Entry
136534048 CDS
T10264
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136534048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136534048
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136534048
mRNA degradation factors
5'-3' decay
Decapping complex
136534048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_EDC4L
Motif
Other DBs
NCBI-GeneID:
136534048
NCBI-ProteinID:
XP_066382634
LinkDB
All DBs
Position
Unknown
AA seq
1338 aa
AA seq
DB search
MASPSGNPNPNPNPPFEIGKLFRPPNPMPTATPNTIFPGVAGGPAGPPPPSGPYSYPPVT
PPFHRGPYIHYPQDPHAMPRPVVSFPMPNPNLNPNPNANPNAAAPGPNPGVRLMQLLGNS
GPTQLETAVSMPQPTSEFAQLQPLPAMPSAPPARMLSSTNSKVPRGRLLGTGERAVHDVD
SRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSL
LRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWRIDEGPDEEKKQQITGKIEIAIQIVGE
AEAYHPRICWHSHKQEILFVGIGNCVLRIDTTKVGRGKDFTVEEPVKCHLEKLIDGVRLV
GKHDGDVTDLSISQWMSTRLASGSKDGTVKIWDDRKQVPLSIFKPHDGQPVYSVAFLTAP
ERPNHINLITAGPLNREVKIWASTNEDGWLLPSDSETWKCTQTLELVSSLEPRVEEAFFN
QVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHESQP
DGEQVVQVYCVQTMAIQQYGLELSLCSPPTADSTGFGRDPAISRVYEAPLEMAGTESSTG
TSFTDSYSVSALSKPPTVDQSADLDLKPSAPPLAYSEGDGSMPLPSAPLAPKMEIPGSGP
APGTRDIDQSAFDYTTNRNMERDALKRPDTPMPIRKDILGKDEPRDGHSDVPMLPNPRLM
FQVGGNATHLVTPSEIISGTLSSAENNDVSKSDGGKSQDISSRSSRVAEVEPKHIDESKP
DQNLGLEAVKETQIVCENMEKTQTSLEQTVEMISERSVTTDKYSVEESQSSSDRRASDQT
GVADDNVLKKFVEIPEKIDYSSASREQSSSFTKEEKVLHPQTSGQPSPPVSAFNSIESHE
PLSSTYLPASSFPEAAATQGMLQQLMGMQKDMEKQLSTVVPASIAKEGKRLETSLGRAVE
KSIKANIDAFWVRLQEENTKREKADRERMQQLVTLITNSINKDLPSNLEKSLKKEISSLG
PIVARAITPIIEKCLTSAVYDSVQKGVGDKVCNQLEKSVTGKLEATLARQIQMQFHTSGK
QALQDALRTSFESLLVPAFEQTCKTMFEQIDGAFQKGMSEHSIAIQQQVEAAHTPLALTL
KETINSASSITQSFSSELLDGNRKLLALVTSGNAKAHNTSALQPINGPMGGPQEVEAPLD
PMKELSRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLRALCAMAPVPLNQGVLLALLQ
QLAIDIHNETSQKVQWMTDVAMAINPADQMIAVHVRPIFEQVYNQLAHQRTLPTTTASDG
TSIRVIMHVINSVLLSYK
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccgagcggaaaccctaacccgaatccaaatccaccattcgagatcgggaaa
ctcttcaggccaccgaaccccatgcccaccgccacccccaacaccatcttccccggcgtc
gccggaggcccggcgggcccgccgccgccgtctggtccctactcctaccctccggtgacc
ccgcccttccaccgcggaccctacatccactacccgcaggacccccacgccatgccccgc
cccgttgtctccttccccatgccaaacccaaacctgaaccccaacccgaacgctaacccc
aacgccgccgccccgggccctaaccccggcgtgcgcctcatgcagctgctcgggaactcc
gggccgacccaactcgagaccgccgtctccatgccccagcccacgtcggagttcgcacaa
ctgcagccgctcccagcgatgccatctgcgccgccggccaggatgctgagcagcaccaac
agcaaggtgcccaggggacggttacttggcaccggggaacgagcggtgcacgatgttgac
tcgaggctgcctggggaagcgcagccaccgcagctggaggtaacaccgattaccaagtac
acatcggatccggggctcgtgctgggcagacagatcgctgtgaaccggacgtacatcgtg
tatggactcaagctcggtaacatccgtgtgctgaacatcaacaccgcactccgctcactc
ctccgtggtcacacacagagagtgacagacatggctttctttgctgaggatgtccatcgt
ttggcaagcgcgagcgtagatgggcggatatatgtgtggaggatcgatgaaggacctgat
gaggaaaaaaaacaacaaattactggaaagattgaaatcgccatccagattgtaggcgag
gctgaagcttaccatccaaggatatgttggcactcgcataagcaagagattctctttgtt
ggaattgggaactgtgtcttaagaatagacacaactaaagtgggtagaggaaaagacttt
actgtggaagaacctgttaaatgtcatcttgaaaagcttattgatggtgttcgcttagtt
ggtaagcatgatggtgatgtgactgatttgtccatatctcaatggatgagcacccgcctg
gcctccggatccaaggatggcacggttaagatctgggatgatcgcaaacaagtgccatta
tcaatttttaagccccatgatggtcaacctgtttattcagttgcttttcttacagcacct
gaacgaccaaatcatataaatctaattacagcgggtcctctgaatcgagaagttaaaatt
tgggcttctactaatgaagatggctggttgttgccaagtgattctgagacttggaagtgt
actcagaccttggaactcgttagttctctggaacctagagtcgaagaggcatttttcaac
caggttgcagtgctgcctcaagcaagcctgattttgcttgcaaatgctaaaaagaacgct
atttatgccgtgcatgttgagtatggcccagatcctgcctctactcgcttagactatata
gcagatttcacagttgcaatgcctatattaagcctcaccggaacacacgaaagccaacca
gatggtgaacaagttgttcaagtctattgtgttcaaactatggccattcagcaatatggt
ctagagttatcactctgttcgcctcctacagctgatagtactgggtttggaagagatcct
gctatttcccgtgtttacgaggcgcctctggaaatggcaggaacagagtcatctacagga
actagtttcacagactcttactctgtcagtgctttgagtaaaccaccaactgttgaccag
tctgcagatcttgatctgaaaccatcagctccaccgcttgcatactcagaaggtgatggt
tccatgcctcttccatctgcacctcttgcaccaaagatggagattcctggatcaggacca
gcacctggaactcgtgatatagatcaatcagcttttgactatacaacaaacagaaacatg
gagcgtgatgctttgaaaaggccagatacacccatgcccattaggaaggatatcttagga
aaagatgaaccaagagatggtcacagtgatgttccaatgcttccaaatccccgtttgatg
tttcaggttggagggaatgctacacacttggttactccatctgaaattatatcgggcact
ctctcgtctgctgaaaacaatgatgtttccaaatctgatggaggaaaaagtcaagatatt
tccagcagaagctctcgggttgcagaagtggaaccaaagcatattgatgagagtaaacca
gatcaaaatttaggacttgaagctgtcaaggaaactcagattgtttgtgagaatatggag
aaaactcagacttctttggagcaaactgttgaaatgatcagtgagcgctcagttacaact
gataagtacagtgtggaagaatcacagtcatcatctgatcgacgggcatcagaccagact
ggtgttgctgatgacaatgttctgaagaagtttgtggaaatccctgagaaaattgattac
tcctctgcttccagggagcaatcgtcttcgtttacgaaagaggagaaagttttgcaccct
caaacatctggtcagccatctcctcctgtgagtgctttcaattcaattgagtcacatgag
cctttgagctccacatacctacctgccagctccttcccagaagctgctgccacacaaggg
atgctgcaacagctcatggggatgcagaaggacatggaaaagcagcttagtactgtggtt
cctgcatccatcgcaaaggagggcaaaagacttgagacatcattagggcgagctgtagag
aaatcgatcaaggctaatattgatgcgttttgggttcgtctccaggaggaaaacactaag
cgtgaaaaggctgatagagagcgaatgcagcaattggttactctcattacgaactcaata
aataaggacttgccttctaatctggagaagtcacttaagaaagaaatttcttcacttgga
cctattgttgcccgcgcaattacacctattattgagaagtgcctgacctctgctgtttat
gattcagttcagaaaggggtgggtgacaaggtgtgcaatcagctggaaaagtctgttact
ggaaaacttgaagctacacttgccaggcaaatccaaatgcagttccatacatctggaaaa
caggctcttcaggatgctttgcgtactagctttgaatcattgcttgttccagcgtttgag
caaacatgcaaaacaatgtttgagcaaatagatggtgcatttcaaaagggaatgtctgag
cactccattgctattcagcagcaagttgaggctgcacatactccgttagcgctaactcta
aaagaaaccatcaattctgcatcatcaatcacccagagtttttcatcagagttacttgat
ggcaatcgcaagctattggcacttgttacttctgggaatgccaaggcacataataccagt
gctttgcagcccattaatggtcctatgggtggcccccaagaggttgaggctcccttagat
ccgatgaaagagcttagcagactgatatctgaacgcaagtttgacgaagcgtttacaatg
gctcttcaaaggagtgacgtttccatagtatcgtggctgtgctcccaggttgatttgcgg
gcattatgtgcaatggccccagtacctcttaaccagggggtccttcttgccttattgcag
cagctagcaattgacattcacaatgagacatcacaaaaggttcaatggatgacagatgtt
gccatggcaatcaacccagcagaccagatgatcgcggtgcatgtgcgacctatctttgag
caagtctacaaccagttggcccaccagcggacactccccaccacgaccgcatcagatggc
accagcatccgtgtgatcatgcatgtaatcaactcggttctgcttagctacaagtga
DBGET
integrated database retrieval system
