Miscanthus floridulus: 136534674
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Entry
136534674 CDS
T10264
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136534674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136534674
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136534674
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136534674
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
136534674
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
DUF6415
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
136534674
NCBI-ProteinID:
XP_066383159
LinkDB
All DBs
Position
Unknown
AA seq
961 aa
AA seq
DB search
MAGAAASPAGGHVVERFRSRLREEAGGGEPGAAAVVRVYAEALRELTFNCKPVITELTII
AGQHAALAARGIADAVCARVAEVPPDQILPSLYLLDSIVKNIGGEYVEHFATRLHSVFVD
AYYRVHPNQYTSMRRLFRTWWPVFPSSVLRSIEDDLQFSPSENNRPTTSTNLHQTESLSP
RPSHGIHVNPKYLEAQHKFKQANVAHQSAARDTMQTTDVQEDRINGLTSNSLRGRPSMFQ
KSSLQYADNPDQQEMIRPLAGTIRATSPHLLSTHSSDVNLDGPLVNSRKNLSRSPPLDVF
PMNVSPKRALERLPPSHSVLGPDPRKLPDRNGMLRWALDDGAQRPTMSMLDEEYRKQSAR
ELIDAYGNCQGRDVDERLPKVQCLDPNGMASRSSARNWLTSEEEEYSWEDMSPTLTDRVR
SSLPSFPPGTVRDGFPRANAGLLESDVGRHNFPSQATRSSVDGSPFNLEDRITTASHVDI
STRRYPRNFGVQNGALLEYQNSEHTLNHGNIDTMSAPPWQKPTGLPLQIQAPQHPSVLDR
IPQPANGEMPVKRLDISGTYNGLNVDIPLVEKHRLSPAPAPTEWLPLHHTQSQTLPLIPP
DTKHVRSASDSLEISCFVSQGASSSVFVPWHQYDSLDRKMGTGNLAQPPYQHQDLLPSSQ
QNQGRILGNQAHPHRPTQLHPHPHSHPHHQETFRSFASVSPFQGQGGTATMTPVSVLPTF
SVPPAVPPYGVPSAPGFPMPPLPPGPRPVPLQMGSSSSQVGGPQPFVSGLLSNLMRHGVI
SLEPPSQSQDSVGVDFNVDLKLRNESVINALYQDLSRQCKTCGLRFKCQEEHRAHMDWHV
TKNRNSKNRKQSSRKYFVTTGEWLRAAETVGNDGVPAFVPSDSVPDRKEEKEIAVPADEE
QTACALCQEPFEDFYSDETDEWMYRGAVYMNAPDGNIDGLERSQLGRIVHAKCRSGPSNT
S
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggccgcggcgtcccccgcggggggccacgttgtggagcggttccgctcgcgg
ctgcgcgaggaagcgggcggcggcgagccgggcgccgccgcggtcgtgcgcgtgtacgcg
gaggcgctccgcgagctcaccttcaactgcaagccggtcatcaccgagctcaccatcatc
gcgggccagcacgccgcgctcgccgccagggggatcgccgatgccgtctgcgcccgcgtc
gccgaggtgccaccggatcagatattaccatctttgtatctgttagatagtattgtgaag
aacataggtggggaatatgtagagcattttgcaactaggttgcacagtgtatttgttgat
gcatactacagagttcatccaaaccagtatacttcaatgaggcgcctttttcgtacctgg
tggccagtgtttccttcttctgtgcttcgcagcattgaggatgaccttcaattttctccc
tcggagaataaccgtcccaccacatcgacaaatctgcatcaaacagagtcgttatctcct
aggccatctcatggcatacatgtaaatcctaaatacctggaagcacaacataagttcaag
caggccaatgtggcgcaccagtcagcagctcgggacactatgcaaacgactgatgtgcag
gaggatcggataaatggattaacatcgaatagtttgcgaggacggccttcaatgtttcag
aaatcttctttacagtatgctgataatcctgatcaacaagagatgattcgaccacttgct
ggaacaataagggcaacatcaccacatctcttgagcacacattcatctgatgtgaatcta
gatgggccattagtcaattcaaggaaaaacctgtccagatcaccacctcttgatgtgttt
cctatgaatgtgtcccccaagagagcgctagagaggctaccaccatctcattctgtattg
ggacctgatcccagaaaattgcctgatcgaaatggcatgttaagatgggctttggacgat
ggtgcacagcggccgacaatgagtatgcttgatgaagagtacaggaagcaaagtgcaagg
gaacttattgatgcatatgggaattgtcaaggccgagatgttgatgaacgacttcctaaa
gtgcagtgcctggatccaaatggtatggctagcagatctagtgcacgaaattggttaact
tcagaggaagaagagtattcgtgggaggatatgagtccaactttgactgatcgagtcaga
agcagcttgccatcttttcctcctggaactgtgagagatggatttcctagggcaaatgca
gggctactggaatctgatgttgggaggcataatttcccaagccaagctactagatcatcg
gttgatggttcaccatttaatcttgaagatagaattacaactgcaagtcatgttgacatt
tccacaaggagatatccaagaaattttggtgttcagaatggagctcttttggagtaccag
aattctgaacataccctaaatcatgggaatattgataccatgtcagctccaccttggcag
aagcctactggtctgccattgcaaatacaggcacctcaacatccctcagtacttgataga
ataccacagcctgccaatggtgaaatgcccgtcaagaggttggacattagtggcacatac
aatggtttgaatgtagatatacccttggtggagaagcacaggttatcacctgctcctgct
ccgacagaatggcttcctcttcatcatacccaatcacaaactttaccgctaattccacct
gatacgaaacatgttagaagtgcatcggatagcttagaaattagttgttttgttagccaa
ggagctagttcatcagtatttgttccttggcatcagtatgattccttggatcggaaaatg
ggtaccggtaacttagctcaaccaccttatcagcaccaagatttgttgccatcaagccaa
caaaatcaaggtagaattttgggaaaccaagctcatcctcatcgccccacacagttacat
ccccatccccattcccatcctcaccatcaggagacttttagaagctttgcctctgtatct
ccattccaaggacaaggaggtactgcaaccatgacacctgtttccgttctgccaactttt
tctgtaccacctgctgtgccaccctacggtgtgccatctgcacctgggtttcctatgcca
ccattaccgcctggaccacgacctgtcccactgcagatgggttcctcatcatcacaagtc
ggtggccctcaaccatttgtctctggactgttgagtaaccttatgcgtcatggtgtaatt
tcactggaaccacctagccaatctcaggattctgttggagttgacttcaatgtagacctc
aagttacggaatgagtctgttatcaatgctttgtatcaggatctttcaaggcagtgtaaa
acatgtggccttcgatttaaatgccaagaggagcatcgtgctcacatggactggcatgtt
acaaaaaatagaaattcaaagaaccgtaagcaatcttcacgtaaatattttgtcaccacg
ggggaatggttaagagcagcagaaacagtaggaaacgatggagttcctgcttttgtgccc
tcagactcagtcccagacagaaaggaagagaaagaaattgctgttcctgcggatgaggag
caaacagcctgtgcattatgtcaagagccatttgaagatttctacagtgatgagactgat
gagtggatgtacagaggtgcagtctacatgaatgcgccagatggtaatattgatggtctg
gaaaggtcacagttgggacgtattgtccatgctaaatgtcgatctgggcccagcaatact
tcttag
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