Miscanthus floridulus: 136535509
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Entry
136535509 CDS
T10264
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
mflo Miscanthus floridulus
Pathway
mflo03030
DNA replication
mflo03420
Nucleotide excision repair
mflo03430
Mismatch repair
mflo03440
Homologous recombination
mflo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136535509
03420 Nucleotide excision repair
136535509
03430 Mismatch repair
136535509
03440 Homologous recombination
136535509
03460 Fanconi anemia pathway
136535509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mflo03000
]
136535509
03032 DNA replication proteins [BR:
mflo03032
]
136535509
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136535509
Transcription factors [BR:
mflo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
136535509
DNA replication proteins [BR:
mflo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
136535509
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
136535509
MMR (mismatch excision repair)
136535509
DSBR (double strand breaks repair)
HR (homologous recombination)
136535509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
136535509
NCBI-ProteinID:
XP_066383867
LinkDB
All DBs
Position
2:complement(162290446..162297088)
Genome browser
AA seq
623 aa
AA seq
DB search
MDAAKSVTPGAVSHILAHPSTGSDGAVPDLVVQVLDLKSIGTGSRFSFMATDGKDKIKAM
LPTNFASEVHSGNLKNLGLIRILDYTCNLVKGNNDKVLIVVKCQLVCQALDAEINGEAKK
EEPPIVLKPKDEGVVVAEQANAPPLVMKPKQEVKSASQIVNEQRGNAAPAARLSMTRRVH
PLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDEDGTQIQATMFNEAAKK
FYPIFELGKVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIIEEAEGETFIPQVQYNFVK
IDQLGSYVGGRELVDIVVVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVNISLWND
LATMTGQELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGKSMLAINPDLPEAQYLKSWYDS
EGKDTSLAPVGAEMGAARAGGLKSMYSDRVFLSHITSDPAMGQEKPVFFSLNAIISHIKP
DQNMWYRACKTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVLKVSDPTGEAWVSVFNE
HAEKIIGCSADELDRIRVEEGEDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRT
EAPVDYAAESKYLLEEIAKLTAC
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgccaagtcggtaacgccgggcgccgtgtcccacatcctggcgcatccgtcg
acgggctccgacggcgccgtgccggatctcgtcgtccaggtcctcgacctcaagtccatt
ggcacgggcagccggttcagtttcatggcaaccgacgggaaggataagatcaaggcgatg
ctccccaccaacttcgcgtcggaggtccactccggcaatctgaagaacctcggtctcatc
cgcatcctcgactacacttgcaacctcgtcaaaggcaacaatgacaaagtcttgattgtc
gtcaaatgccagcttgtgtgccaagcgctcgacgccgagatcaacggcgaggccaagaaa
gaggagcctccaattgtgctgaagcctaaggacgaaggcgtggtcgtggctgagcaagca
aatgctcccccactcgtgatgaagcccaagcaggaggtgaagtccgcgtcccagattgtg
aatgagcagcgtggaaatgctgctcctgctgcgcgcctttccatgacaaggagggtccat
cccttgatcactctgaatccctatcagggtaactgggtcatcaaggtgcgggtcacgagc
aaaggcaacctgagaacctacaggaatgctcgtggagaaggctgtgtcttcaatgtagag
ctcactgatgaggatggcacccagatccaggccaccatgtttaatgaggctgcaaagaag
ttctatccaatttttgagctgggaaaggtctattatgtctcaaaaggatctcttagaatt
gccaacaagcagttcaagactgtccaaaatgactatgagatgtcactaaacgaaaatgct
attattgaagaagcagagggggaaactttcattccgcaagtgcaatacaactttgtcaag
attgatcagctaggatcatatgttggtggcagggagcttgtagatattgttgttgtggtt
cagagtgtatctccaacactcagcgttagaagaaagattgacaatgagacaataccaaag
cgtgacattgttgtagcagatgactctggcaaaactgttaatatttctctctggaatgat
cttgctactatgactggccaagagcttttggacatggttgacagttctcctgttgttgcg
ataaagagcctaaaagtatctgatttccaaggtgtgtctctttcaactataggcaaaagt
atgctcgctattaatccagacctacctgaggctcagtatctgaaatcatggtatgactct
gaaggcaaagatacttcactggcaccagttggtgcagaaatgggtgctgcacgtgctggt
ggcttgaagtccatgtattctgatagagtttttctgtcccacatcaccagtgatcctgct
atgggccaggaaaagcctgttttcttcagtttgaatgccatcataagccacatcaagcct
gaccagaatatgtggtaccgtgcttgtaagacctgcaacaagaaggtgactgaagctttt
ggatctggatactggtgtgagggatgccaaaagaacgactctgaatgctcactgagatac
atcatggtcctcaaggtctctgatcccactggtgaggcatgggtgtccgtgttcaatgag
catgccgagaagatcattggctgcagtgctgacgagcttgatcggatcagggtagaggag
ggggaggacagttacgttctcaagctcaaggaagccacctgggttcctcacctgttccgc
gtcagtgtcacacagcatgaatacatgaacgagaaaaggcagaggatcaccgtgaggact
gaagcaccggtcgactacgcagctgaatccaagtacctgcttgaagagatcgcgaagctc
actgcttgctag
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