Miscanthus floridulus: 136535533
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Entry
136535533 CDS
T10264
Name
(RefSeq) pre-mRNA-processing factor 39-1-like
KO
K13217
pre-mRNA-processing factor 39
Organism
mflo Miscanthus floridulus
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136535533
Spliceosome [BR:
mflo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
136535533
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
136535533
NCBI-ProteinID:
XP_066383920
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Position
2:163100642..163108984
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AA seq
768 aa
AA seq
DB search
MEQDQSAAVGSADSGAAASDFATGNPPGLAVTGGSAVAPDGGAQAADASAYQAEHTALNG
TAGDMANYQTGAAENGEAVTNEMGEPVPEPSYEEAVLSAEEARLWSVVTVNSLDFNAWTT
LIEETEKNAENNILKIRKVYDSFLAEFPLCFGYWKKYADHEVRLDGFSKVIEVYERAVVA
VTYSVDIWYNYCQFAISTYDDPDIIRRLFERGLAYVGTDYRSNILWDEYIKYEESLEAWS
HLAVIYTRVLEHPIQQLDRYFNCLKELASKHSFSEILTAEEASVYVVTSEASAQAPDGEA
HPDDVDKPGQPEISSSTDAENLAKYVSMREVMYKKAKEYESKIIGFELAIRRPYFHVKPL
DNPELENWHNYLDFIEKEEDINKVIKLYERCVIACANYSEFWIRYVQCMEDKGSLDLANN
ALARATHVFVKKQPEIHLFSARFKELNGDISGARAEYQHLYSDLCPGFLEAIVKHSNMEH
RLGERELSCTVYEKAIAAEKGKEQSQLLPTLLIQYSRFLFLAVRDLEKAREILNVLHEQL
NVTKPVLEAVIHLESIFPCEKRIEFLDSLVEKFVTPESSQGEVASLVDKEEMSSIFLEFL
DLFGDAKSIKKALTRHTTLFSCKRSILPSKKRKADDAIVSDRDKFAKTGATQSATGTDPN
ASNPPVWPATSEASGQQWGASYAQQAAYPAYGTYDYSHQMPQPAPQAAAYGAYPPTYSAQ
AYTQQSYAQPAAIPAAPVPAVVPAATPASAYPQQPAAAPQPYYGTTYY
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagatcagagcgcagctgtcggcagtgcggactctggtgccgcggcttctgat
tttgcgactggcaatccacctggcttggctgtgaccggcggaagcgccgtggcccccgac
ggtggagctcaggcagctgatgcctctgcctaccaggccgagcacacggcgttgaatggg
acggctggcgatatggctaattaccaaacaggagctgcagagaacggcgaagccgtcacc
aacgagatgggcgagccagttcctgagccatcctacgaggaagctgtgctttcagcagaa
gaggctagattatggagtgttgttactgtgaattccttagattttaatgcctggaccaca
cttattgaggaaacagagaaaaatgctgagaacaatattttgaagatacggaaagtgtat
gattcgtttcttgcggaattccctctttgctttgggtattggaagaaatatgctgatcat
gaagtgagacttgatggcttcagtaaagttatagaggtgtatgaacgagcagttgttgca
gttacttattcagtggacatttggtataactattgtcagttcgcaatttcaacatatgat
gacccagatatcatccgaagactgtttgaacgtggcttggcatacgttggaacagattat
cgttccaatattttgtgggatgagtatattaagtatgaagagtcactggaggcttggagt
catctagctgttatatatacaagagtattggagcatcccatccagcagcttgatcggtat
tttaattgcctcaaggaattggcttctaagcacagtttttcagaaatacttactgcagaa
gaagcctcggtgtatgttgtcacgtctgaggccagtgctcaagcgcctgatggtgaggca
catcctgatgatgtcgataagcctggtcaaccagaaatttcatcttcaacagacgcagag
aaccttgcaaagtatgtctccatgagggaagtgatgtacaagaaggctaaagagtatgaa
tctaagatcattggttttgagctagctattagaaggccatattttcacgtcaagcctctt
gacaatccagagcttgaaaattggcataactaccttgactttatcgagaaggaagaagac
attaataaggttatcaaattgtatgaaaggtgtgtaattgcatgtgctaattattcagaa
ttctggatccgctatgtgcaatgtatggaggataaagggagtctagacctagcaaacaat
gccctggctcgtgctactcatgtgtttgtcaagaagcagccagagatccatctgtttagt
gcgcgctttaaggagcttaatggggatatttctggtgcacgtgcagaatatcagcatctt
tactcagatttatgtcctggctttctagaggccattgtgaagcattctaatatggaacac
cgactgggagagagagaattatcctgcacagtttatgaaaaggccatcgctgctgagaag
ggaaaggaacagagccagctcttgccaacattgcttattcagtactcccgtttcttattt
ttggccgtccgagacttggagaaggcaagggagatattaaatgtgctgcatgagcagtta
aatgtaacaaagccagtgcttgaggctgtcatccatctagagtcgatttttccatgcgaa
aagcgtattgaatttttagactcacttgtggagaagtttgttacacctgaatcatctcag
ggagaggtggcaagtctagttgacaaagaagaaatgtcttccatttttttagagtttttg
gatctctttggggatgcgaagtcaatcaagaaggctttaactcggcatacaactctcttt
tcatgtaagagaagcattctgccatcaaagaaacggaaagcagatgatgctattgtgtca
gacagggacaaatttgctaaaactggagctacacagtcagccacgggaactgatccaaat
gcttccaatcctcctgtttggcctgcaacttctgaagcatctgggcagcaatggggagct
tcttatgcacagcaggctgcatatcctgcatatggaacttatgactacagccatcaaatg
cctcagcctgctcctcaagcagctgcctatggtgcttatcctccaacatactctgctcag
gcttatacacaacaaagctacgcacaacctgcagcaattccagcagcaccagtgccagca
gtggtaccagcagctacaccggcatcagcttaccctcagcagcctgcggcagctcctcaa
ccttattatggcacaacctactactga
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