Miscanthus floridulus: 136537656
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Entry
136537656 CDS
T10264
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136537656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136537656
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136537656
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136537656
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
136537656
U7-dependent histone pre-mRNA processing factors
136537656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF2594
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
136537656
NCBI-ProteinID:
XP_066385709
LinkDB
All DBs
Position
2:complement(3096303..3099280)
Genome browser
AA seq
697 aa
AA seq
DB search
MASSAAAPSGAPPAGKRPASSGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIH
PAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYK
LLLSDYVKVSKVSVEDMLYDENDIARSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAM
FMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIVREKRFTE
VIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQT
YINSMNERIRNQFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKW
CTDKKNACVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMSVHYISFSAHADFPQTSN
FLDELRPPNIILVHGEANEMSRLKQKLITQFDGTNTKIVSPKNCQSVEMYFTCEKMAKTI
GRLAEKVPEGGESSGGLLVKKGFTYQIMAPEDLRVFTQLSTANITQRIAVPYSGSFEVIK
YRLKQIYESVESATEESDVPALIVHERVTVRLDSESYVTLQWSSDPISDMVSDSVVAMIL
NIGREGPKVVPVEEAAKTKEETEKVAQKVVYALMVSLFGDVKVAEDGKFVISVDGNVAHL
DGMSGDVECENATLKERIKTAFRRIQSAVRPIPLSAS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctccgccgcggcgccgagcggcgcgccaccagctgggaagcgcccggcctcc
agcggacgggagggagaccagatggtcatcacgccgctgggcgccggcagcgaggtcggc
cgttcctgcgtccacatgaccttcaagggccgcaccgtcctcttcgactgcggcatccac
ccggcgtactctggcatggcggcgctgccctacttcgacgagatcgatccgtccaccata
gacgtcctcctcatcacccactttcacttggaccatgccgcctcgctgccgtacttcctg
gagaagactacattcaagggccgggtgtttatgacccacgccacaaaggctatttacaag
ctgctgctctcggattatgtcaaagtcagcaaagtgtccgtggaggatatgctgtatgat
gagaatgacattgctcgctccatggataaaattgaggttatagatttccaccagacattg
gaagttaatgggatacgcttttggtgctacactgctggccatgtacttggggccgccatg
ttcatggtggatattgctggcgtgcgcattctttacactggtgactactcccgtgaagaa
gaccgccacctacgagctgctgagctcccacagttctccccagacatttgcattattgag
tcgacctatggtgtacagcaacatcaaccccggattgttcgtgagaagcgctttactgag
gttattcacaatactgtttcacagggggggcgtgttcttatcccggcatttgcacttggc
agagcacaagaactgttacttatcctcgatgagtattggtccaaacacccagagctccat
aagattcctatctattacgcttcccctcttgccaagaggtgcatggctgtctaccagaca
tacataaactccatgaatgaaaggatacggaaccagtttgcacaatccaatcccttccat
ttcaagcacatcgagtccttgaatagcattgataattttcatgatgtgggtccttcagtg
gtgatggctagtccaggtggtcttcagagtggtctctctaggcagctttttgataagtgg
tgcacagataagaagaatgcctgtgttattccaggttatgttgtggagggaacccttgca
aagaccattattaacgagccaagagaagtgacactagctaatgggctcactgctcctctt
catatgtcggtccactatatctctttttcagctcacgcagatttccctcagacaagcaat
tttttggatgaacttcggccaccaaatattattcttgtgcatggagaagcaaatgaaatg
tcaaggcttaaacagaaacttattactcagtttgatggtacaaatacgaaaattgtgtct
cccaagaattgccaatcagtagagatgtatttcacttgtgagaaaatggccaagactatt
ggtaggctggcagaaaaagtaccagaaggtggagagtcttccggtggcttacttgtcaag
aagggattcacgtatcagattatggcgcctgaagatctccgtgtcttcacacagttatca
acagctaacatcactcagcgcattgcagtcccttattctggttcttttgaagtcataaag
tacagactgaagcaaatatatgagagcgtggagtcagcaacagaagaatctgatgttcca
gcattgattgtgcatgaaagagtgacagttcgcctggattcagaaagttatgttacactg
cagtggtcatccgatcccatcagtgacatggtgtctgattctgtggtggctatgatcttg
aacatcggtcgggaaggtcccaaagttgttccggttgaagaagcagcgaagaccaaagaa
gagacagaaaaggttgctcaaaaggtggtgtatgctcttatggtatcacttttcggtgat
gttaaagttgcagaggatgggaaatttgtcatatctgtagacggaaatgtggcgcacttg
gatgggatgagtggcgatgttgaatgtgaaaatgctacactgaaggaacggatcaagact
gcattccgtcgcatacagagcgccgtgagaccaatcccactttcagcctcttga
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