Miscanthus floridulus: 136538051
Help
Entry
136538051 CDS
T10264
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136538051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136538051
03012 Translation factors [BR:
mflo03012
]
136538051
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136538051
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136538051
Translation factors [BR:
mflo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
136538051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
ABC_tran
AAA_16
AAA_23
NACHT
ATPase_2
Myosin_head
Motif
Other DBs
NCBI-GeneID:
136538051
NCBI-ProteinID:
XP_066386134
LinkDB
All DBs
Position
2:16990344..16996954
Genome browser
AA seq
1152 aa
AA seq
DB search
MRRGLRRGLGILLVPLPHAPSRPPPISLAALLLLPRRLNGFSRHSFCSFPGVGRAVEQFS
DDEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNVEEQEIISRDRRDRRDYDQIANLAKRM
GLYSEMYGRVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPLD
KCGGNTKSGSEMAENANLDEQHDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGAKMLE
FRRSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNIICT
QPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSDRNL
NGVTHVFVDEIHERGMNEDFLLIVLKELLSRRRDLRLILMSATLNAELFSSYFGGAPTIH
IPGFTHPVRAHFLEDILERSGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVEE
ALKNSSFETYGSRTRDSLVNWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDITCL
KDQLKAHPLLGDPNRVLLLACHGSMATSEQRLIFEKPPPNVRKVVLATNMAEASITINDI
VFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAF
ADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPAPLAVENAVEFLKMIGALDGN
ENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSVRDPFLLPQEKKDLAGT
AKSRFSAKDYSDHMALIRAYEGWKDAEREGSAYEYCWRNFLSSQTLQAIHSLRKQFSYIL
KDSGLIDSDGNTNNSLSHNQSLVRGIICSGLFPGIASVVHRENSMSFKTMDDGQVLLYVN
SVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILFLFGGAVTKGGMAGHLKMLDGY
IDFFMDPSLSECYLQLKEELDKLIQKKLEDPNFDIHKEGKYILFAVQELVAGDLCEGRFV
FGRETSRARLRNPEDDGKSNIIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAMV
EFKGMQFVGKPKRNKQLAERDAAIEALGWLTQTSGVKTQDEDDDDSPLDLTDSMLKLLTR
PRRHSKNNSRKR
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggcctgcgtcgcgggttgggcatcctcctcgtcccactcccgcacgcaccc
agccgcccgccgccgatctctctcgcggctctccttctcctcccccgccgcctcaatggc
ttctcccgccactccttttgcagcttccccggcgtggggcgtgccgttgagcagttctca
gacgacgagtatgaccacgagtatgaggacctccggccgtcgtcatcggtggcgaacatc
gacgagtggaggtggaagctgagcatgcttcagcgcaacgtggaggagcaggagatcatc
tccagggaccggagggaccgccgggattatgaccagatagccaacctagccaagaggatg
gggctctacagtgagatgtacgggcgggttgtggttgcgagcaaggtaccactgccgaac
tacaggcctgatctggatgacaagcggccacaaagagaggtggtgatcccgctgagcttg
cagaggagagttgaaggacttgtgcaggagcatctagaccgtgcactcttaccactggat
aaatgtggtggcaacacaaaaagtggctctgagatggctgagaatgcaaacctggatgag
cagcatgattctctgcttgatcggtcagtcatggagaagatacttcagaggaagagcatt
cggatgcgaaattttcagagaagttggcaggaatcacctgaaggtgctaagatgctggaa
ttccggagatcacttccagcatacaaagaaaaagaaaggcttctagcagccattgcacgc
aatcaggttattgtaatttctggtgagacagggtgtggtaaaacgacacagctgcctcag
tttgtattggaatcagagattgagtctggtcgaggggccttttgtaacataatttgtaca
cagccacgaaggatatctgcaatggcagttgcagaaagggtatccacagagagaggagaa
aatcttggcgaatcggttggctataaagtccgattggagggaattaagggaaaagataca
catttgcttttctgcaccagtggcatcttactaagacgattactgagtgaccgaaacttg
aatggtgtgactcatgtgtttgttgatgaaatacacgaaaggggcatgaatgaagatttc
ctattgattgtactaaaagagctgttatcacggcgccgtgatttgaggttgatattgatg
agcgctactctaaatgcggaactcttctcaagttattttggaggagcaccaactattcat
attcctggattcacacatccagtaagggcacattttttggaagacatattagagaggtca
ggctacaagttgacctcaagcaatcaacttgatgattatgggcaagataaagtctggaaa
actcagagacagctattgcctagaaaaaggaaaaatcaaattactacacttgttgaggaa
gcccttaaaaattcaagctttgagacctatggttccaggacacgtgattctctagtgaat
tggaatcctgattgcattggtttcaacctcatagaggctgttctgtgccacatatgtcgc
aaagagcgacctggtgctgttttagtttttatgactggatgggacgatattacttgcttg
aaggatcaactgaaagcacaccctttgttaggtgatccaaatagggttttgctgcttgca
tgccatggttctatggctacttctgagcagaggctaatttttgagaagccacctcctaat
gttcggaaggtagtccttgccacaaatatggcagaagcaagtattacaataaatgatatc
gtttttgtcgttgattgtggtaaagcaaaggaaaccacatatgatgctctaaacaatact
ccctgcttactcccctcatggatttcgaaagcttctgcccgtcagaggaggggtagagct
ggccgtgtgcaacctggagaatgctaccatctgtaccctagatgtgtgtatgatgcattt
gcagactatcagcttccagagcttcttagaactcctttgaattcattatgtctgcagata
aaaagtttgcaagtcggcagcattggggagttcctatcagctgctctacagcctccagca
ccactagctgtcgaaaatgcagtggaattcctgaagatgattggagcattagatggaaat
gagaaccttactgatcttggacgatacctttccatgcttccagttgatccaaaattggga
aagatgcttataatgggtgcagtttttcggtgcatagatcctatacttactgtagttgct
ggactgagtgttcgggatcctttcctgttgccacaggaaaagaaggatttggcaggaaca
gcaaaatctagattctcagcaaaagattatagtgatcatatggccctcattcgggcttat
gaaggatggaaggatgcagagagagaagggtctgcttatgaatactgctggagaaatttc
ctttcttctcaaacactacaagccattcactctcttcggaagcaattcagctatatttta
aaggattctggtttgatagactctgatgggaatacaaataacagtttgagccataatcaa
tcattggtccgcggtattatatgttctgggctttttcctgggatagcatctgttgtgcat
agagaaaactccatgtcctttaagaccatggatgacggccaagttcttctttatgttaat
tcagtgaatgcaaaatatcagaccataccatatccatggctggtctttggtgagaaggtg
aaggtgaatgctgtcttcatccgtgattcaactggagtatcagactccatactctttctg
tttggtggtgctgtaacaaaaggaggcatggctgggcacttgaagatgctcgatggctac
attgatttctttatggatcccagcctatctgaatgctacctgcaacttaaagaagaactt
gataaacttatacagaagaagcttgaagacccaaattttgacatccacaaggaaggcaag
tacatcctattcgccgtacaagagctcgtcgctggtgacctatgcgaagggaggttcgtg
tttggccgcgaaacaagccgtgccaggctccggaaccctgaggacgacggcaagagcaac
atcataaaggacgggatgaaccccaagagcctgctgcagacgctgctgatgcgggccggc
cacaccccacccaagtacaagacgaagcacctcaagacgaacgagttcagggccatggtg
gagttcaaggggatgcagttcgtggggaagccgaagcggaacaagcaacttgcggagcgg
gacgccgccatcgaggcgctggggtggctgacgcagacgtccggcgtgaagacgcaggac
gaggacgacgatgactcgccgctggacctgactgatagcatgctgaagctgctcaccaga
ccgaggcggcactcgaagaataactctagaaaacgatga
DBGET
integrated database retrieval system
