KEGG   Miscanthus floridulus: 136538891
Entry
136538891         CDS       T10264                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mflo  Miscanthus floridulus
Pathway
mflo03030  DNA replication
mflo03410  Base excision repair
mflo03420  Nucleotide excision repair
mflo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    136538891
   03410 Base excision repair
    136538891
   03420 Nucleotide excision repair
    136538891
   03430 Mismatch repair
    136538891
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mflo03032]
    136538891
   03400 DNA repair and recombination proteins [BR:mflo03400]
    136538891
Enzymes [BR:mflo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     136538891
    6.5.1.6  DNA ligase (ATP or NAD+)
     136538891
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     136538891
DNA replication proteins [BR:mflo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    136538891
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     136538891
DNA repair and recombination proteins [BR:mflo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     136538891
   NER (nucleotide excision repair)
    Other NER factors
     136538891
   MMR (mismatch excision repair)
    Other MMR factors
     136538891
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HVO_A0114 Bud13 ORC5_C
Other DBs
NCBI-GeneID: 136538891
NCBI-ProteinID: XP_066386921
LinkDB
Position
2:57056263..57063754
AA seq 882 aa
MFLLRASSTTTATSSLLLRCRPLPSPKTLALAPPPTILPICFRPRLSASSSSASXRRRAT
AAGESGEKKPPTARAKRADAVPAAAAAGMSASGGGSSGKRTVADVLMGNARAAASKAKKA
APSPKKPPAKTGGAEAEPEAAAVAEKPPSPVRSKRASSPAKSPKLLADGPTSPAKSKGPA
AAAQLDAAKENSPSPKRSKTLAAKSDTQPSGEGVVSHTDEKKRAASPKKAKTTDSPKTEE
KNTTLELKKKGSEFDPMAAAYWKPGEPVPFLFLARALDLISNESGRIVITEILSNVFRTV
MATTPDDLLATVYLSANRIAPPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLKELGDL
GLVAKASRSSQKMMFKPKPLTIARVLSTFRAIAKESGKDSQDKKRNHMKGLLVAATDCEP
QYITRLLQSKMRIGLAEKTVQMALGQAAVYSDKNSSPPKVQSPFEEAAKIIKQAYSVLPI
YDKIVPAILEVGVWKLPETCKFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGE
RAQIHCMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKQKI
LPFQILSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKIRREHLYNSFEEVPGV
FQLATAITSNDLEEIQKFLDTAVNSSCEGLIIKTLDKDATYEPAKRSNNWLKLKKDYMDS
IGDSLDLVPIAAFYGRGKRTGVFGSFLLACYDEQNEEYQTICNIGTGFSEQQLEERSASL
RSKVIEKPKAYYRFADTMDPDVWFEPSEVWEVKAADLSISPVHRAANGIVDPNKGISLRF
PRLLRLRDDKSPEQATTSDQVADMYRSQKINHGYNQEDEDDD
NT seq 2649 nt   +upstreamnt  +downstreamnt
atgttcctcctcagagccagcagcaccaccacggccacctcctcgctcctcctccgatgc
cgtccgctcccctcgcctaaaaccctagcactcgccccgcctcctactatcctccccatc
tgcttccgcccccgcctctccgcctcctcgtcctccgcatccnnccgccgccgtgcgacc
gcggcaggcgaatccggggagaagaagccgccgaccgcgagggccaagcgggccgacgca
gtgcctgcagcggcggcggccggaatgtcggcctccggtggaggatcctcggggaagcgc
acggtggcggacgtgttgatggggaacgcacgggctgccgccagcaaggcgaagaaggca
gcgccgtccccgaagaagcccccggcgaagactggcggcgcggaggccgaaccggaggct
gcagcggtggcggagaaaccgccttcgccggtgaggtccaagcgggcgtcgtccccagcg
aagtcccccaaattgctggctgatgggcctacatcgccggctaagtccaagggtccagcc
gcggccgctcaattggatgcggcgaaggagaattccccgtcgccaaagaggtccaaaact
ctagccgctaaatccgacacccagccttctggtgaaggtgttgtctcgcacaccgatgag
aagaagcgggccgcttcacccaagaaggccaaaaccacagattccccaaagacagaggag
aagaataccaccctagagctaaagaagaaaggcagtgagtttgacccgatggctgctgcc
tattggaagcctggtgagcccgtgccattcctgtttctggctcgggcacttgatctcatc
tccaacgagagtggccgcatcgttattacagaaatcctatcaaatgtgtttcgcacagtg
atggcaacaacaccggatgatctccttgcaactgtgtacctctcagccaaccggattgcg
ccacctcatgaggggattgagcttgggattggggatgcatcagtcatccgtgcacttgca
gaggcatatggacgcaaagaggagcatgttaagaaggaccttaaggaattgggtgatttg
gggcttgtggcaaaagcaagcaggtcatcacagaagatgatgtttaagccaaaaccactg
acaatagctcgggtgcttagcacttttcgggcaattgcaaaggaatcgggcaaagacagt
caagataaaaaaagaaaccatatgaagggacttcttgttgctgcaactgactgtgaaccc
cagtacatcacgcgccttcttcagtcaaagatgaggattgggctggcagagaaaactgtc
caaatggctcttgggcaagctgccgtatattctgacaaaaattcttcgccaccaaaagtt
caatcacctttcgaagaggctgcaaaaataattaaacaagcatattcagttcttccaata
tatgataaaattgtcccagcgatacttgaagtaggagtttggaagcttccagagacatgc
aaattttccataggtgtccctgttggccctatgttagcaaaagcaacaaaatctgtctca
gagatcattgacaagtttcagggtcttgaatacacttgtgagtacaagtatgatggtgaa
agggctcagatacattgcatggaggatggttcagtagagatttatagtcggaatgctgaa
agaaacactggaaagtatccagatgttgttgatgcagtttctagatttcggaagcctaca
gtcaaatcatttgtcttggactgtgaaattgttgcctatgatcgtgaaaaacagaaaatt
ttgccttttcagatacttagcacaagggctcgcaagggtgttaccataaatgacatcaaa
gtttcagtctgtacttttggctttgatattctttacataaacgggaaacctcttctccag
gaacaactcaaaattcgtcgagagcatctttacaactccttcgaagaagtgccaggtgtt
tttcaattggctactgcaattacatcaaatgacctggaggagatacagaaatttcttgac
acagctgtcaactccagttgtgaagggttgattatcaagacattggataaagacgctacg
tatgagccagcgaagcgatcaaacaattggttgaaactgaagaaggattacatggatagc
attggagactctttggacttggtacctattgctgccttctatggtagaggaaaacgaaca
ggtgtctttggatcattcctcctggcatgctatgatgagcagaatgaagaatatcaaaca
atatgcaacataggtactggattttctgagcaacagcttgaagaacgttctgcgagcctt
cgaagtaaagtgatagaaaaaccaaaggcatactatagatttgctgacacaatggacccc
gatgtgtggtttgagccatcagaggtgtgggaggtcaaagctgcagatctgagcataagc
cctgtacatcgtgctgctaatggtatagtcgatcccaataagggtatctccctaaggttc
cctcgtctgttgagattacgtgatgataaaagcccagaacaagccaccacgtctgaccaa
gtcgctgacatgtaccggtctcaaaagatcaaccacggttataaccaggaggatgaggac
gatgactga

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