KEGG   Miscanthus floridulus: 136539053
Entry
136539053         CDS       T10264                                 
Name
(RefSeq) protein RRP6-like 1
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
mflo  Miscanthus floridulus
Pathway
mflo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    136539053
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mflo03019]
    136539053
Messenger RNA biogenesis [BR:mflo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     136539053
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT
Other DBs
NCBI-GeneID: 136539053
NCBI-ProteinID: XP_066387078
LinkDB
Position
2:67953295..67960571
AA seq 903 aa
MEADEASAPPPPPWAQNKSAAAIEASSGPLAAAASRLSARSRALPSSRDFHFYNNFPAFK
SPVGAAAAKADASLGVLGVAPLLPTRQQQPFPGGGDLDDAHDWLVALNDDLLERFGASTD
EFKALREKEEASGRRAAPDARDGDGFQVVCGKKKKKVGDVGEERVGRVGAFGGSGSVKMV
TKDKATAPGVKAKVPFHIRTIPRPQDVHRIVVDNSSKPFEHVLLERSEDGTRFVHPLEKL
PVEQLISRNVLDSEPVKPPALDDTPYTFVEDLKTLEVLATKLKDATEFAVDLEHNHYRTF
QGLTCLMQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSI
YVCNLFDTGQASKVLQMDRNSLEHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDT
HYLLYIYDLMRLRLVNESSGENDLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENEL
NARQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSGKLKRIVKSRNLFL
ERHLGHVINNIRDAIAASGAFESVAEQLKKGKLEELTVADVKNSSDVIEMIPAVDVDNIE
DPNDESAVVSAVITNVGAAPCMGTITSEASLGNMHLEDVLPETKDSGTSSGFTGPADTEK
LSNDQQQAAKATVQVSKRPTAFGALFGKPAAGRRPDLFLGFSNVQGKTKVDKIASSVVLP
FHHFSGGAKPSSAVLPAKESLHSEPESIQHSDPTCQLEEVIQLDMETDEPQPPENGNEDG
HCETEDTEMSKSPSDDPSGTEQRFRTLNEERNVQQNQKTPREFEFSVPVVPFDYAEARKN
LVSSEPKAERRKDDAVARAINTDSGDKQIASKKPGGGENEGNFQHPRRRQAFPPSGNRSA
TYH
NT seq 2712 nt   +upstreamnt  +downstreamnt
atggaagcggacgaggcctcggcgccgcctcccccgccgtgggcgcagaacaagtcggcc
gcggccatcgaggcctcgtcgggcccgctcgccgccgcggcgtcccgcctctccgcccgc
tcacgtgcgctcccctcgtcccgcgacttccacttctacaacaacttcccggcattcaaa
tcccccgtcggcgccgcggccgccaaggccgacgcctccctcggcgtgctcggcgtggcc
ccgcttctcccgacgcggcagcagcagccgttccccgggggcggcgacctcgacgacgcg
cacgactggctcgtcgccctcaacgacgacctgctcgagcggttcggcgcctccacggac
gagttcaaggcgctgcgggagaaggaggaggcctccgggcggagggcggcgcctgatgct
cgggacggggacgggttccaagtggtgtgcgggaagaagaaaaagaaggtgggcgatgtg
ggtgaggaacgcgttggaagagttggggcgtttgggggttctggctctgtgaagatggtc
accaaggacaaggcgaccgcgccgggggtgaaggcgaaggtgcccttccacatccgaacc
atcccaaggccgcaggatgtgcaccgcattgtggtggacaactccagcaagccgttcgag
catgtcttgcttgagcgcagcgaggatggcactcgtttcgtgcacccattggaaaaactc
cctgttgaacaactaatcagcagaaatgttcttgatagtgagccagtaaagccacctgct
ttagatgacactccttatacatttgttgaagacctgaaaaccttggaggtgctagccaca
aagctgaaggatgcaactgagtttgctgttgatttggaacacaaccattataggacgttt
cagggtttgacatgcttgatgcagatttcaacaagaacagaggactttattgttgacact
cttaagcttcgtaaatatcttggtgattatctaagagaatttttcagagatccaaccaag
aaaaaggtaatgcatggcgcaggtcgtgatattatatggcttcaacgagacttcagcata
tatgtgtgcaacctttttgacacaggccaggcttcaaaggtcttacagatggaccgtaac
agcttggagcatcttttgcaccatttctgtggagtaactgcaaacaaagaataccaagct
gcagattggagattgaggccccttcctgatgaaatgatcaaatatgctagagaggataca
cactatctgctatatatatatgacctgatgagattgagactagtgaatgagtcatcaggt
gaaaatgatcttttagaggtttgcaagcgcagcaatgaaatttgcttgcaactatatgag
aaggagcagctgactgatacatcatatctacatatacatgggttgaaagaaaatgagctg
aatgcaagacagctgtcagttctttctagtctatatcgatggagagatggcattgcccgt
gctgaggatgagagcactggctatatattacccaataagactctacttgagatagcaaag
gagatgcctgtgacaagtgggaagttaaaaagaattgttaaatcaagaaatttgtttctt
gagcgccatctcggccatgttattaacaatataagggatgccatagcagcttctggtgct
tttgaaagtgtagcggagcagctgaagaagggaaagctggaagagttaacagtggcagat
gtgaagaacagcagtgacgtcattgaaatgattcctgctgttgatgttgataacattgaa
gatccgaatgatgaatctgctgtagtttctgcagtgattacaaatgttggtgctgctccc
tgtatggggactattacaagcgaagcttctttgggtaatatgcatttagaggacgttttg
cctgaaacaaaggactcgggtacttcatcagggtttactggaccggcagatacggaaaaa
ctgagcaatgaccagcagcaagcagcaaaggctactgttcaagtatcaaagaggcctaca
gcttttggagctctgtttggaaaaccagctgctggacgaaggccagatcttttcctaggg
ttttcaaatgttcagggtaagactaaggtggacaagatagcgtcttccgtggtacttcct
tttcatcatttctctggtggtgcaaaaccttcatcagccgtccttccagcaaaagaatcg
ttgcattctgaaccagaaagcatccaacacagtgatccaacttgtcagttggaagaagtg
atacagttggacatggaaacagacgagccacaaccaccagaaaatggcaacgaggatgga
cactgtgagactgaagacactgagatgtcaaagtccccttcagatgacccctctggtacc
gagcaacgattccgaacactcaacgaagaaagaaatgttcagcagaatcagaagacacct
cgagaattcgaatttagtgttccagtggtaccttttgattatgccgaagccagaaagaat
ctcgtgtctagtgagcctaaagctgagaggagaaaagacgatgcggttgcaagggctata
aatacggactctggagataagcagatagcttcaaaaaagccaggtgggggagagaacgag
ggaaatttccagcatccacgaagacggcaggcttttccgccttcaggcaatagaagtgct
acatatcactag

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