Miscanthus floridulus: 136539053
Help
Entry
136539053 CDS
T10264
Name
(RefSeq) protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136539053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136539053
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
136539053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
136539053
NCBI-ProteinID:
XP_066387078
LinkDB
All DBs
Position
2:67953295..67960571
Genome browser
AA seq
903 aa
AA seq
DB search
MEADEASAPPPPPWAQNKSAAAIEASSGPLAAAASRLSARSRALPSSRDFHFYNNFPAFK
SPVGAAAAKADASLGVLGVAPLLPTRQQQPFPGGGDLDDAHDWLVALNDDLLERFGASTD
EFKALREKEEASGRRAAPDARDGDGFQVVCGKKKKKVGDVGEERVGRVGAFGGSGSVKMV
TKDKATAPGVKAKVPFHIRTIPRPQDVHRIVVDNSSKPFEHVLLERSEDGTRFVHPLEKL
PVEQLISRNVLDSEPVKPPALDDTPYTFVEDLKTLEVLATKLKDATEFAVDLEHNHYRTF
QGLTCLMQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSI
YVCNLFDTGQASKVLQMDRNSLEHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDT
HYLLYIYDLMRLRLVNESSGENDLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENEL
NARQLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSGKLKRIVKSRNLFL
ERHLGHVINNIRDAIAASGAFESVAEQLKKGKLEELTVADVKNSSDVIEMIPAVDVDNIE
DPNDESAVVSAVITNVGAAPCMGTITSEASLGNMHLEDVLPETKDSGTSSGFTGPADTEK
LSNDQQQAAKATVQVSKRPTAFGALFGKPAAGRRPDLFLGFSNVQGKTKVDKIASSVVLP
FHHFSGGAKPSSAVLPAKESLHSEPESIQHSDPTCQLEEVIQLDMETDEPQPPENGNEDG
HCETEDTEMSKSPSDDPSGTEQRFRTLNEERNVQQNQKTPREFEFSVPVVPFDYAEARKN
LVSSEPKAERRKDDAVARAINTDSGDKQIASKKPGGGENEGNFQHPRRRQAFPPSGNRSA
TYH
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggacgaggcctcggcgccgcctcccccgccgtgggcgcagaacaagtcggcc
gcggccatcgaggcctcgtcgggcccgctcgccgccgcggcgtcccgcctctccgcccgc
tcacgtgcgctcccctcgtcccgcgacttccacttctacaacaacttcccggcattcaaa
tcccccgtcggcgccgcggccgccaaggccgacgcctccctcggcgtgctcggcgtggcc
ccgcttctcccgacgcggcagcagcagccgttccccgggggcggcgacctcgacgacgcg
cacgactggctcgtcgccctcaacgacgacctgctcgagcggttcggcgcctccacggac
gagttcaaggcgctgcgggagaaggaggaggcctccgggcggagggcggcgcctgatgct
cgggacggggacgggttccaagtggtgtgcgggaagaagaaaaagaaggtgggcgatgtg
ggtgaggaacgcgttggaagagttggggcgtttgggggttctggctctgtgaagatggtc
accaaggacaaggcgaccgcgccgggggtgaaggcgaaggtgcccttccacatccgaacc
atcccaaggccgcaggatgtgcaccgcattgtggtggacaactccagcaagccgttcgag
catgtcttgcttgagcgcagcgaggatggcactcgtttcgtgcacccattggaaaaactc
cctgttgaacaactaatcagcagaaatgttcttgatagtgagccagtaaagccacctgct
ttagatgacactccttatacatttgttgaagacctgaaaaccttggaggtgctagccaca
aagctgaaggatgcaactgagtttgctgttgatttggaacacaaccattataggacgttt
cagggtttgacatgcttgatgcagatttcaacaagaacagaggactttattgttgacact
cttaagcttcgtaaatatcttggtgattatctaagagaatttttcagagatccaaccaag
aaaaaggtaatgcatggcgcaggtcgtgatattatatggcttcaacgagacttcagcata
tatgtgtgcaacctttttgacacaggccaggcttcaaaggtcttacagatggaccgtaac
agcttggagcatcttttgcaccatttctgtggagtaactgcaaacaaagaataccaagct
gcagattggagattgaggccccttcctgatgaaatgatcaaatatgctagagaggataca
cactatctgctatatatatatgacctgatgagattgagactagtgaatgagtcatcaggt
gaaaatgatcttttagaggtttgcaagcgcagcaatgaaatttgcttgcaactatatgag
aaggagcagctgactgatacatcatatctacatatacatgggttgaaagaaaatgagctg
aatgcaagacagctgtcagttctttctagtctatatcgatggagagatggcattgcccgt
gctgaggatgagagcactggctatatattacccaataagactctacttgagatagcaaag
gagatgcctgtgacaagtgggaagttaaaaagaattgttaaatcaagaaatttgtttctt
gagcgccatctcggccatgttattaacaatataagggatgccatagcagcttctggtgct
tttgaaagtgtagcggagcagctgaagaagggaaagctggaagagttaacagtggcagat
gtgaagaacagcagtgacgtcattgaaatgattcctgctgttgatgttgataacattgaa
gatccgaatgatgaatctgctgtagtttctgcagtgattacaaatgttggtgctgctccc
tgtatggggactattacaagcgaagcttctttgggtaatatgcatttagaggacgttttg
cctgaaacaaaggactcgggtacttcatcagggtttactggaccggcagatacggaaaaa
ctgagcaatgaccagcagcaagcagcaaaggctactgttcaagtatcaaagaggcctaca
gcttttggagctctgtttggaaaaccagctgctggacgaaggccagatcttttcctaggg
ttttcaaatgttcagggtaagactaaggtggacaagatagcgtcttccgtggtacttcct
tttcatcatttctctggtggtgcaaaaccttcatcagccgtccttccagcaaaagaatcg
ttgcattctgaaccagaaagcatccaacacagtgatccaacttgtcagttggaagaagtg
atacagttggacatggaaacagacgagccacaaccaccagaaaatggcaacgaggatgga
cactgtgagactgaagacactgagatgtcaaagtccccttcagatgacccctctggtacc
gagcaacgattccgaacactcaacgaagaaagaaatgttcagcagaatcagaagacacct
cgagaattcgaatttagtgttccagtggtaccttttgattatgccgaagccagaaagaat
ctcgtgtctagtgagcctaaagctgagaggagaaaagacgatgcggttgcaagggctata
aatacggactctggagataagcagatagcttcaaaaaagccaggtgggggagagaacgag
ggaaatttccagcatccacgaagacggcaggcttttccgccttcaggcaatagaagtgct
acatatcactag
DBGET
integrated database retrieval system