Miscanthus floridulus: 136541477
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Entry
136541477 CDS
T10264
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136541477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136541477
03016 Transfer RNA biogenesis [BR:
mflo03016
]
136541477
Enzymes [BR:
mflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
136541477
Messenger RNA biogenesis [BR:
mflo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
136541477
Transfer RNA biogenesis [BR:
mflo03016
]
Prokaryotic type
tRNA degradation factors
136541477
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-GeneID:
136541477
NCBI-ProteinID:
XP_066389482
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All DBs
Position
3:complement(25267737..25279707)
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AA seq
886 aa
AA seq
DB search
MLACPAALHLLLPAPPPPHHLHHHHVAFPAPPLHASLPCSRRARRRAPCPRHGVARASAT
VAEEASGSGPAKLSVRIPVGDREILVETGHIGRQASASVMVTDGETILYCSVCLADTPND
PADFFPLSVHYQERLSAAGRTSGGFFKREGKTKDHEVLVCRLIDRPLRPTMPKGFYYETQ
ILSWVFSYDGIHSPDCLAITAAGIAVALSEIPNKQTIAGVRIGLINDQFVVNPTTEQMEN
SELDLMMAGTDSAILMIEGYCDFLTEEKLLEAVEAGQVAIREICKAIDVLVQSCGKKKMV
DAISLPPPELYRHVEDISGDELVKALQIKGKIPRRKALSALEDKVISILSEQGCVSKDGS
SGVTESLADIVEDEDEDEYEIIVDGEVDEGDVHIKPVSRKPPPQLFAEVDVKLVFKEVSS
KYLRRCIVEGGKRSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMA
QRIDNLVDTEDSKSFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPPEEDF
PYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGSP
LILSDITGAEDASGDMDLKIAGNESGISAFQMDIKVVGITLPVMEQALLQARDGRQYILN
EMSKSSPPPSKELSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGT
VKITARDLSSLEKSKTIIANLTMVPKVGEIYRNCEIKSIAPYGAFVEIAPGREGLCHISE
LSSGWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDADSESSSGSTKEKAPQKD
DAIKMTSRTPRRKRQSEPSGAENATTRTLEKSAAAPAGSKGSEAAK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgtgccccgccgcgctccacctcctcctcccggcgccgccgccgccgcatcac
ctccaccaccaccacgtcgccttccccgcgccgccgctccacgcctcgctcccgtgctcg
cgccgcgcgcggaggagggcgccctgtccaaggcatggagtcgccagggcctccgccaca
gtggcggaggaggccagcggttccggaccggccaagttgtccgtgaggatccccgtcggc
gaccgcgagatattggtcgaaacaggccacattgggaggcaagcgagtgcttctgtaatg
gtcactgatggcgaaacgattctctactgttctgtctgtctggcggatactccaaatgac
cctgctgactttttccctttatcggttcactatcaagagcgcctttcagctgctggaaga
actagtggtggtttcttcaaacgagaaggcaagacaaaagaccatgaggttttggtttgc
agattgatagacaggcccctacgacctactatgcctaaggggttctactatgaaactcaa
attctatcctgggtcttcagttatgatggcattcactccccggactgcttggctatcaca
gctgctggtatagccgtggccctctctgaaattccaaataaacaaacaattgctggagta
agaattggcctgattaatgaccagtttgttgttaacccaactactgaacagatggagaat
tcagagttagatttgatgatggctgggactgatagtgccattttgatgattgagggttac
tgtgattttctgactgaggagaagctgcttgaagctgtggaagctgggcaggtggcaatt
agagaaatctgcaaagcaattgatgttctcgtccagagctgtgggaagaagaaaatggtc
gatgctatcagcctaccgcctcctgaactctacaggcatgttgaagatatttctggagat
gagttggtgaaggcattacaaataaaaggaaagattcccagaagaaaagctctttcagca
ttggaggacaaagttataagtatactttctgaacagggttgtgtttccaaagatggctca
tctggagtcactgaaagtttggctgatattgttgaggatgaggatgaggatgagtatgaa
attatagttgatggagaagtagatgaaggtgatgttcacatcaagccggtttcaaggaag
ccccctcctcagctatttgcagaagttgatgtcaagctagtcttcaaggaagtttcatct
aaatatttacgaaggtgcattgtagagggaggaaagcgaagtgatggacggagtccttgg
gaacttcgacccattaattctcaatgtggtttacttccaagagctcatggtagtgctctg
ttcacgaggggagaaacacagtcactggctgtggtcactttaggtggctatcagatggca
caacgaattgacaaccttgttgatacagaggattcaaaaagcttctatcttcagtactca
tttcctccatcatgtgttggcgaagttggtcgaattggagcacctagccggagagagatt
ggacatgggatgcttgcagaaagggcactggagccaattttacctccggaagaggatttt
ccgtacactattcgtgtcgagagtactatcactgaaagtaatggttcgtccagcatggct
tctgtttgtggaggttgtttagcacttcaagatgctggggttcctataaagtttcctgtt
gctggaattgcaatgggcctggtccttgatacacaggaatttggtggagatggtagcccg
cttatactttctgatattactggagctgaagatgcctctggtgacatggatttgaagatt
gctggtaatgaaagtggcatatctgcatttcagatggacattaaggtagtcgggataact
ctacctgtgatggagcaagcactccttcaagctagggacgggagacagtatattctgaat
gaaatgtcgaaatcttcacctccaccatcaaaagaactatctccatatgctcccttaatt
catgttatgaaggtcaaacctaacaaggtgaatttaataattggttctggtggaaagaca
ataaaaagcataattgaggagactggagtagatgctattgatactggagacgatggcacg
gtaaaaattactgcaagagacctatcaagcttagagaagtcaaaaactataatagctaac
cttaccatggttccaaaagttggagaaatatacaggaattgtgagatcaagtcaatagct
ccatatggcgcttttgttgaaattgctccagggcgtgagggtttatgtcatatcagtgag
ttaagttcgggctggttggccaaggctgaggatgcttttaaagtcggagatcgcatagac
gtcaagcttattgagataaatgataagggtcaacttcggctaagttctcgagctttgctt
cctgatgcggattcagaatccagcagcggttcaacaaaagaaaaggcgccgcaaaaagat
gatgccatcaagatgacatcaaggacacccaggcgcaagagacagtctgagccgtctgga
gctgaaaatgccacaacaaggactcttgagaaaagtgccgctgctccagctggttcaaag
ggtagtgaagctgcgaagtag
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