Miscanthus floridulus: 136541583
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Entry
136541583 CDS
T10264
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136541583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mflo03021
]
136541583
03041 Spliceosome [BR:
mflo03041
]
136541583
03036 Chromosome and associated proteins [BR:
mflo03036
]
136541583
Transcription machinery [BR:
mflo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
136541583
Spliceosome [BR:
mflo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
136541583
Complex B
136541583
Complex C
U2 SnRNP specific factors
136541583
Chromosome and associated proteins [BR:
mflo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
136541583
TFTC complex
136541583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
136541583
NCBI-ProteinID:
XP_066389617
LinkDB
All DBs
Position
3:38726676..38738920
Genome browser
AA seq
1358 aa
AA seq
DB search
MKPSSTAGDASASTAEAASSSSSSGPSTSASTSTADATHYIAKRVLRGSAVLHVAEGCFR
SPDSADVVLAKETSLELVAVGDDGVLQSICDQDMFGIIKDIGVLQWHSRHVGLIPQIEHK
DLLVVLSDSGKLSLLYFCSEMHRFFAIANIELSKPGNLRHHLGRILAIDRESNFVAVSSY
EDKFALIHVSVSQSGSGRGIISEKKYFYPPENEEDSKIISSSRTSIRGTIWTMRFISIPQ
DEEYYPVLAMIINRKGSDVNDLSLFGYDTSSCVIDHISSYSEIGPLALDISEIPEMFGFA
LLLRVGDALLLDLRNPRNVCCIRRISLMTSLIGERITVEDSCPGLDVDDDVAACALLELR
DSANNIMKDDGYMDIDGVDSRGNVKPRIVCSWSWEPPEPVRRGWARLLFCLDDGEFHILE
FTLDVEGVKLYKFEYIDRSLPCRPLFWMKNRMIIGFVEMGDGMIFKLGDRRLFHKSTIQN
VAPILDLAIADYHGEKQDQMFACCGMSPEGSLRVLRNGVNVDRLLKTEAIYQGVTGLWTL
RMKTTDAYHSFLVLSFVEETRILSVGLSFNDISDAVGFQPDVCTLACGLVADGLLVQIYS
KGVKVCLPTVYAHPEGAPLTSPICTDWYPAITISVGAVGHNIVVVVTSNPCCLYVLGVRS
SSSYQYELYATHHVQLQYEVSCISIPQEDWRHDNVTFSCGEGDDICNNSPPKADVRKFAV
IGTHRPSVEIISLEPGEALRVLTIGNISVNNAFGAPMSGCIPENVRFVAAERFYILAGLR
NGMLLRFESEASDYLPGFFYKDSSIPSINTFLQFISIRRIGITPVLLVPIHDSANADIIV
LSDRPWLLHAARHSLAYSSISFLSASHVTPVSSVDCPNGLLFVAESCLHLVELVHGKRLN
AQKFSIGGTPRKVLYHNESRTLLVLRTGLSGASSSSDIVQVDPQNGVLLSRYKCEPGETA
KCMQIAKIGNDQVLIVGTNKSAGRPMMSNGEAESSIKGRLIVLSLEAVGSPRESSSFIPT
SSFNPSSHSGSPFHEIVGYTTEEFSSNSLCSSPDEFCCNQIQAEQMAGQLRSLTHAILNG
AVLAVCPYLDRYVLAAAGNTIYVFGFTNENPHRMKKCAVGRTRFTITCLKTFASRIAVGD
CRDGVLFYSYNESHRKLELIYSDPAHRLVGDIALLNCETAVVSDRRGSISVLSCTRLEVS
ESPQKNLAVNCSFYMGETAMSIQKAAFRYRLPIDDDTDPVLETVYDCIVASTMLGSLFVM
IPLTSEEHQLLQDVQERLSVHPLTAPVLGNDHAEFRQRGTPSVVPPILDGDMLVQFLELT
GEQQQAILAHTLPGKGPHRPLSVFEVLRTLERIHYALN
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgaagccctcctccaccgccggcgacgcctccgcgtcaacggcggaggcggcgtcctcc
tcctcctcttcggggccctccacgtccgcgtccacgtccaccgcggacgccacccactac
atcgccaagcgggtgctccgggggagcgccgtgctccacgtcgccgagggctgcttccgc
tcgcccgactccgccgacgtcgtcctcgccaaggaaacttcactggagttggttgctgtt
ggtgatgatggtgttttacagtcaatatgtgatcaagacatgtttgggattataaaagat
atcggtgtattgcaatggcactctagacatgttggtttaattccacagatagaacacaaa
gatcttctggttgtcctttcagattctggaaagctttcccttctttacttttgttctgag
atgcataggttcttcgcaattgccaatattgagttatccaaaccaggaaatctgaggcat
catctgggaagaattttagctatagatcgagaatctaattttgttgctgtcagttcatat
gaggataagtttgcccttatacatgtttctgtttctcagagtggttctggcaggggtatc
atttctgagaagaaatatttttatccaccagaaaatgaagaggattcaaagatcataagt
tcgtctaggaccagcatccgtggtacaatttggacgatgcgcttcatatctatcccccaa
gatgaagaatactatccagttctggcaatgataattaacaggaaaggctctgatgtgaat
gacttgtcgttatttggatatgacaccagcagctgtgttattgaccacatctctagttat
tcagaaattggaccgttggcacttgacatatcagaaattcctgaaatgtttggctttgca
cttctgttgcgtgttggtgatgctttattgttggatcttagaaatccaaggaacgtctgc
tgtatccgaagaatcagcttgatgactagcctcattggagagcgaatcactgttgaagat
tcctgtccaggattagatgttgatgatgatgtggctgcttgtgctttgctagaattgaga
gattctgctaataacataatgaaggatgatggttatatggacattgatggtgttgacagc
agaggtaatgtgaaaccaaggattgtttgctcgtggagctgggagccacctgaacctgtc
aggcgtggatgggcaaggcttctattttgtttggatgatggagaatttcatattttggaa
tttactttggatgttgaaggggtgaagctgtacaaatttgaatatattgataggagtttg
ccttgcagacctcttttttggatgaaaaatagaatgataatagggtttgtagagatgggg
gatggcatgatttttaaacttggcgatcgtaggttgtttcataaaagcacaattcagaat
gtagcaccaatattggatctagcaattgctgattaccatggtgagaaacaggatcagatg
tttgcatgctgtggaatgtcccctgagggctctcttcgagttttacggaatggtgtcaat
gtggacagacttttgaaaactgaagctatttatcagggtgtcactggtttgtggactttg
agaatgaagacaactgatgcctaccattcttttcttgtgttatcatttgtggaggaaacc
agaatcctgtcagtaggactaagttttaatgatatcagtgatgctgtgggattccagcct
gatgtttgcactttagcatgtggtttggtggctgatggtctgcttgttcaaatttacagt
aaaggtgttaaggtctgtttgcctacagtatacgctcaccctgaaggtgcccctttaact
tctccaatttgcactgactggtatcctgctatcactatcagtgttggtgctgtaggacat
aatattgttgttgttgttacatcaaatccttgttgcttatatgtccttggtgttagatca
tcatcttcttaccagtacgagttgtatgcgacacatcatgtgcaattgcagtatgaagta
tcatgcatatctatcccacaagaggattggagacatgataatgtaactttcagctgtgga
gagggtgatgacatttgtaacaattcccctcctaaagctgatgttcgcaagtttgctgtt
attggaactcatagaccttcagtggaaatcatctccttggaacctggagaagcattaagg
gtattgactattgggaatatatcagtgaataatgcgtttggtgcgccaatgagtggttgt
atacctgaaaatgtcaggtttgttgctgctgagaggttctacattcttgcaggcttgaga
aatggaatgctactcagatttgagtcagaagcaagtgattacctccctggttttttctac
aaggactcttctattccttctattaatacattccttcagttcatttcgatacggcgtatt
ggaattactcctgtactgttagtgccaatacatgattcagcaaatgctgacatcattgtt
ctcagtgatagaccttggctattacatgcagcaagacatagcctggcatattcgtccatt
tcatttctttctgcttctcatgtcacacccgtttcatctgttgattgccccaatggtcta
ctgtttgttgctgagagctgtttgcatttggttgaattggttcatgggaagcgattgaat
gcacaaaagttttcaattggagggactccaaggaaagtgctataccataatgaaagcaga
acactgttggtactaagaactgggctaagtggtgcatcgtcttcttcagatattgtccaa
gtagatccacaaaatggggtattactttcgagatataagtgtgaacctggtgaaacagca
aaatgcatgcaaattgcaaaaataggaaatgatcaagttttaatcgttgggaccaataag
tctgctggacggccaatgatgtcaaatggtgaagcagaaagcagcatcaagggacgcctg
attgttctaagcttggaggcggttggaagtcctcgtgagagcagttcgtttattccaact
tctagttttaatccctcttcacattctggttctcctttccatgagattgttggatataca
actgaggaattttctagtaacagcctgtgcagcagtcctgatgagttttgctgcaaccag
atccaagctgaacaaatggcaggacaattgagatcattgactcatgctatattgaatggc
gcagttcttgctgtgtgtccctatctagatcgttatgtgttggcagctgctggtaatacg
atttatgtatttggtttcacaaatgaaaatccccacaggatgaaaaagtgtgctgttggt
aggacacgatttacaataacttgtctgaagacatttgcatcacgaattgctgttggtgat
tgtcgtgatggtgttctcttctattcttataatgagagccatcggaagttggaattgatc
tattctgatcctgctcatagattggtgggtgatattgctcttttaaattgcgaaactgct
gtggtatcagatcgacgtgggagcatatctgtattatcatgcacaagattggaagtttca
gaaagtccacagaagaacttagctgtgaattgttcattttatatgggtgaaacagctatg
agcattcagaaggctgcattcaggtatcggcttccaattgatgatgatactgacccagtg
cttgagacagtttacgactgtattgtggcaagtaccatgctggggagtctctttgttatg
attccacttacaagtgaggagcatcagcttttgcaagatgtccaagaaagactctcagta
cacccattaactgcaccagtcttgggaaatgatcatgcagaatttcgtcagcgtggtacc
ccttcagtagtgcctcccattcttgacggtgatatgcttgtgcaattcttggagctcacc
ggtgaacagcagcaagccatccttgctcatactttgccagggaaggggccacataggccc
ctctcggttttcgaggttttgcgaacattagagcgcatccattatgctcttaactga
DBGET
integrated database retrieval system
