Miscanthus floridulus: 136541771
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Entry
136541771 CDS
T10264
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
mflo Miscanthus floridulus
Pathway
mflo03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
136541771
mRNA cycle factors
Common to processing body (P body) and stress granule
136541771
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136541771
NCBI-ProteinID:
XP_066389954
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Position
3:complement(69968978..69976803)
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AA seq
1040 aa
AA seq
DB search
MMTVPMDSASVAPSSARDLAERLLTRNNELEDQLRKSAKSKVPSDPNIWLQMRDNFEKII
LLDHDLSEQKEVEYLLWQLHYKRIEDFRRNISAASSVASSGKSNANPDRVKRIKSAFKSF
LSEATGFYHDLMLKIKSNWGLPLSYFPEGLDNANNSVRDDKKTVQLKKGLISCHRCLIYL
GDLARYKSLHGDGDSASREYAAASSYYKEAASIYPSSGNPHHQLAILASYSGNEVVAVYR
YFRSLAADTPFTTARDNLIILFEKNRQIYGQLPDNNKVPSAKTLPPRSSGRDRGRGEVRF
QPKDVNTETAERERECNIHDTLKAFYIRFVRLNGILFTRTSLETFGELFSSVSNDLQILL
SSGLEDELNFGCDAAENALAAVRLTVILIFTVHNVKKEPDSQSYAEIVQRRVLLQSAFTA
AFDFVGRILRRCSELRDIASSFYLPAILVYIEWLASHPELAVDSEMEEKHANARSFFWNQ
CISFMNKLILTNLASMDDDDDEACFSNMSIYEEGETGNRLALWEDLELRGFLPLVPAHTI
LDFSSKHTFGSVGSTKEKKARVQRIFAAGKSLLNFVQIDQLRIYFDPSSKKFVMAKNPPV
SKANNPLHESPDALKTNGADMDHEAARRFDSVSSNMDTLQSKLHFGPDGDDDEEIVFKPT
ASEKFPKAPSDLSVNGYTYPVPMSAAGWPTNASLVSVQSTASMSATGWPPNGGSHSFLAA
GNYNVNQSLPRSSVGWAVNGEQNVIPSIAPRFELMQPVEEPASSWTSSGAQHVGPQHTGL
TFQDVVSEPHVSASMVQRFSSPDYSKFLSEQEMLLMNGLKTVNITGNGYLEQRLQAGLSG
VQSIGYSSTEPAGTTKNSMHNHVNITGETVPSTLDSVVPSMAPSGGMPMKFTEAPLTALK
KNPVSRPSKPVGPPPGFNHVTPKRQDDSILVEKLQSPQVDDYSWLDGYQPSIDHVNNLRA
VYPGVSDTSTAFSTPFPFPGKQQVSGIHAQGANEKTWQDFHLFEPSKQNMFQNYHQRNQQ
SGQIAEQEPSNSIWSSSYHV
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgttcccatggatagtgctagcgtagccccatcctccgcgcgggaccttgcc
gagcgtctccttactaggaacaatgaactcgaagatcagctccgcaagtccgcaaaatcc
aaagtcccatcggatcccaacatatggcttcagatgcgtgacaactttgagaagataatt
ctcttagatcatgacctctctgaacagaaagaggtagaatatctcctgtggcagttgcac
tacaaaagaattgaggacttcaggaggaacattagtgctgcaagctcagttgcatctagt
gggaagagcaatgctaacccagatcgagtcaagagaattaaatcagccttcaaaagcttc
ctttcagaagcaactggcttctatcacgacttgatgttaaagatcaaatcaaattggggc
cttccactcagttactttccagagggccttgacaatgcaaacaactctgtgcgagatgac
aagaaaacagttcagttgaagaaaggtttgatttcatgccatcgctgtctgatatatttg
ggagatcttgctcgttacaagagtttgcatggtgatggtgattctgctagtcgtgaatat
gcagctgcttctagttactacaaagaggcagcttctatctacccttccagtggcaaccct
catcatcagcttgctatactagcttcttactcaggcaacgaggtggtagctgtttatagg
tacttccgaagcttagctgcagatactccttttaccactgcacgggacaacttgattatt
ctttttgaaaagaatcgccaaatctatggacagctgccagacaacaacaaagttcccagt
gctaagacattacccccacggtcatctggtagggaccgaggacggggagaagtaaggttt
cagccaaaagatgttaatactgaaacagctgaaagggaacgggagtgcaatattcatgat
acattgaaggccttctatatacgatttgtcaggctcaatggaattcttttcacgaggacc
agtttggaaacatttggggagctgttttcttcagttagcaatgatttgcagattctcctt
tcttctggtcttgaggacgagcttaatttcggttgtgatgctgcagaaaatgcattagct
gctgttaggcttactgtcatccttatattcacagtacacaatgtaaagaaggaacctgat
agccagtcgtatgctgaaattgtgcaacgcagagtactgctccaaagtgcatttacggct
gcttttgattttgttggacgaattctcagaaggtgttcagagctccgtgatatcgcatca
agcttctatctgccagccattctggtgtacattgaatggctggcgtcccatccagagttg
gctgttgattcagagatggaggaaaagcatgcaaatgccagatctttcttctggaaccaa
tgtatctcatttatgaataagctgatccttaccaaccttgcatctatggatgatgatgat
gatgaggcttgcttttctaatatgagcatttatgaggaaggtgaaactggcaacaggctt
gccctttgggaagatcttgaattgagaggttttttgcccttagttcctgcacataccatt
ttggatttttcaagcaaacacacatttggaagtgttggaagcaccaaggagaagaaagca
cgggttcaacgaatttttgctgcagggaagtcactgctgaactttgttcagatcgatcag
ttgaggatatattttgatccatcttccaagaaatttgtcatggccaagaaccctcctgtt
tctaaagctaacaaccctcttcatgagtctcctgacgcacttaaaacaaatggcgctgac
atggatcatgaggctgctagaagatttgactcagtttcctctaatatggacacactgcag
tctaagttgcactttggtcctgatggtgatgatgatgaagaaattgttttcaagcctaca
gcttctgaaaagtttccgaaagctccttcagacctgtcggtgaatggatacacctatcct
gtaccaatgtctgctgctggctggccaaccaatgctagtttagtgtctgttcagagcact
gcatcaatgtctgcgactggttggccacccaatggtgggtcacattcttttctagctgct
ggtaattataacgttaaccagtcgcttcccaggtcttctgttggttgggctgtcaatggt
gagcaaaatgttattcctagcattgctccaagatttgaactcatgcagcctgttgaggag
cctgcttccagctggacaagcagtggtgcacagcatgttggtcctcagcacacaggttta
actttccaagatgttgtctctgaaccacatgtatctgcatcaatggttcaacgttttagt
agccctgactattcgaaatttctcagtgaacaagaaatgctgttaatgaatggactgaag
actgtcaacataactggaaatggctatctagagcagagattgcaggctggattgagtggt
gtacagtctattgggtattcgtctactgaacctgctggtaccactaaaaactcgatgcat
aatcacgtgaacattactggagagactgtcccctctacacttgattcagttgtaccttca
atggcaccatcaggtggcatgccaatgaaattcacagaagcaccactaactgctttaaag
aagaaccctgttagtcgtccatcaaagcctgttgggccacctccaggatttaatcatgta
accccgaagcgtcaagatgattctattctggttgaaaaactgcagagcccacaggtcgat
gattacagctggctagatggctatcagccatcgattgatcatgttaacaatttaagagct
gtttatcctggtgtcagtgatactagcactgcattttccactccattcccattccctggg
aaacaacaggtctctgggatacatgcacaaggggccaatgagaagacatggcaagatttc
cacctttttgagccttcaaaacagaatatgttccaaaattaccaccaaagaaatcagcaa
agtggtcaaatagctgaacaagagccatcaaattctatctggtctagcagttaccatgtg
tga
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