KEGG   Miscanthus floridulus: 136541896
Entry
136541896         CDS       T10264                                 
Name
(RefSeq) THO complex subunit 6-like
  KO
K13175  THO complex subunit 6
Organism
mflo  Miscanthus floridulus
Pathway
mflo03013  Nucleocytoplasmic transport
mflo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mflo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    136541896
  09122 Translation
   03013 Nucleocytoplasmic transport
    136541896
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mflo03019]
    136541896
   03041 Spliceosome [BR:mflo03041]
    136541896
Messenger RNA biogenesis [BR:mflo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     136541896
Spliceosome [BR:mflo03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    136541896
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR41 WD40_CDC20-Fz EIF3I WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_ACSF4 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Hira Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_Nup120_160 NBCH_WD40 Beta-prop_RIG_2nd Dit-like_CBM2 Beta-prop_SPT8 v110
Other DBs
NCBI-GeneID: 136541896
NCBI-ProteinID: XP_066390164
LinkDB
Position
3:complement(90207245..90212218)
AA seq 385 aa
MATAAAAAAAQSHPASMDARGWDDASYRRGILRALDLSSRTLFRAVFFDNSNDPDPDVVL
AAASSDGSLASFSLSSCISAGSAASQVETAAALVDPVCIVHAHSGPAYDVRFYPDPQQPL
LFSCGDDGRIRGWRWHEMQSCLVPLSLQGDHLEPALDLVNPQHEGPWGARSPIPENNAIA
INKQDGSILAAAGDACAYCWDVETGKCKIKFKGHADYLHSVAVRESNHQVVTGSEDGTAR
IWDCRSGKCTQVIHPVKSKAFDSSWVSCVAIDASESWLACGTSSGISVWSLLSNECIFNL
DCHAPVQDLLFDKNQILAVGAEPVLSRLTINGTVLSQIKCAPQSAFSVSMHSSGIAAVAG
YGGLVDVISEVGSHLCTFRSRGLDK
NT seq 1158 nt   +upstreamnt  +downstreamnt
atggcgacggcggcggcggcggcggcggcgcagtctcatccggcatcaatggacgcgcga
gggtgggacgacgcatcctaccgccgcggcatcctccgtgccctcgacctctcgtcccgc
accctcttccgtgccgtgttctttgacaacagcaacgacccggaccccgacgtcgtactc
gccgccgcctccagcgacggctccctcgcctcattctccctttcatcctgcatctcagcc
ggctccgctgcctcccaggtggagaccgctgccgctctggtcgaccccgtctgcatcgtg
catgcgcacagcggccccgcctacgacgtcaggttctaccccgatccgcagcagccgctg
ctcttcagctgtggggacgacggccgcatcaggggctggaggtggcatgagatgcagagc
tgccttgtccccctctccctgcaaggggatcatctcgaaccagcacttgacttggtcaac
cctcagcacgagggtccttggggtgctcggtctccaatacctgaaaataatgccattgca
attaataaacaggatgggtccattttggcagcagcgggggatgcatgtgcttactgctgg
gatgtggagactggtaaatgtaaaatcaaattcaaggggcatgctgattatttgcacagc
gttgcagttcgtgagtcaaaccaccaggttgtaacaggatcagaggatgggactgctcgt
atctgggattgcagaagtgggaagtgcacgcaggttatacatccagtaaagagtaaggca
tttgatagttcttgggtcagctgtgttgccattgatgcaagtgaaagttggctggcgtgt
ggcacgtctagtggtatatcagtttggagccttctctcaaatgagtgcatctttaatttg
gactgtcatgctcctgttcaagatttgttgtttgacaagaatcaaattttagcagttggt
gctgaacctgtgctctcccgtctcacaataaacgggacagtcctttcacaaataaaatgt
gctcctcagtcggcgttttctgtctccatgcattcatctgggatagcagctgttgctgga
tacggaggtctggtggatgtgatctcagaagttgggagccatctgtgcacattccgtagc
cggggcctagacaagtaa

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