Miscanthus floridulus: 136541937
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Entry
136541937 CDS
T10264
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
mflo Miscanthus floridulus
Pathway
mflo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136541937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136541937
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
136541937
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Tudor_KDM3B
AAA_22
LBR_tudor
Chromo_MORC2_6th
Cadherin_2
Vta1
Motif
Other DBs
NCBI-GeneID:
136541937
NCBI-ProteinID:
XP_066390220
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Position
3:96752266..96761464
Genome browser
AA seq
1300 aa
AA seq
DB search
MASRRASNGRSPLVRKQSQITAFFSSSPTPSPSPSGPSPGASKPSPSPLNPSARMRSPLA
VVSPSPPKLPQPQQKQKKGKKDKEERDAVAAVPAPLAAEVVGRRLRVYWPLDDAWYKGRV
EAYDAASRRHRVKYDDGAEEKVDLGKEKFEWEAAVEDSTPPPARKLRMSDTSVAKSPAVA
EDSAGDSTEDEDWKRDTVVEDDSEEVELDEEDDEEVVAMRARKGKPKNSLPMSGSTPSTL
GSGLTSESGSKISKKRKNVDVASLDFAKRFTFEAVNTTRKVDPEVPMSCGQKGQTMGNDY
TALTGDAAERFGQRDAEKFKFLGEGRKDAKGRRPGSPGFDPRTLLLPPQFLKSLTGGQRQ
WWEFKSQHMDKVLFFKMGKFYELFEMDAHVGAKDLDLQYMKGEQPHCGFPEKNLSVNLEK
LAEKGYRVLVVEQTETPEQLELRRKEMGIKDKVVRREICAVVTKGTLIEGEHLLANPDPS
YLLSVTESHQQSSKKSQDTCTIGVCIVDVSTSKFIVGQFQDDPERHGLCSILSEMRPVEI
IKPGKMLSPETEKALKNNTRKPLINELLPSTEFWDAAKTIDEIKQYYSSADKQNNADDIQ
DCVDCLPNLLCELIGAGDKTYALSALGGSLFYLRQTLLDEKILPRAEFEPLACSGLINNI
RKHMILDAAALENLELLENMRTGGLSGTLYAQLNHCVTGFGKRLLKRWIAKPLYDRRAIL
QRQSAVATFKGVGQDYAAQFRKDLSRLPDMERLLARLFSSCDENKRSSSVVLYEDASKRL
LQQFTAALRGCQQMFHACSSISTLICTEGSQLNDLLSPGKGLPNISSILDQFRDAFDWSE
ADRNGRIIPCEGCDPDYDATCYAIEEIKSSLKEYLKEQRKLLRPASVNYVDVGKDMYLIE
VPEILGGSVPRNYELQCTKKGFYRYRTPVLKELILELSKVESEKESKLKGILQNLIQLFV
EHHTEWRQLVSVVAELDVLISLAIASGYFEGPSCCPTIKELNGPDDTPTFHARNLGHPIL
RSDSLGKGSFVPNDVKIGGSGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGADVPAES
LELSLVDRIFVRMGARDHIMAGQSTFLVELEETASVLSSATKNSLVVLDELGRGTSTSDG
QAIAASVLEYLVHQVQCLGLFSTHYHRLAMEHKDTKVSLCHMACEVVEGEGGLEEVTFLY
RLTRGACPKSYGVNVARLAGIPTSVLQRANEKSSDFEANYGKRHKMSKDKHASAQSDDEF
SVIRDFFRVVKAWPRPEDQEASISMLRELQKHAKVKAVEG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcgccgagccagcaatggccgctcgccgctcgtgcggaaacagagccagatc
accgcctttttctcctcctcccctaccccctccccgtccccctcgggcccgagccccggc
gcgtccaagccctctccgtcgccgctgaaccccagtgcgaggatgaggtccccgcttgcc
gtggtgtccccatcccctcccaagctgccgcagccgcagcagaaacagaagaagggaaag
aaggataaggaggagcgtgatgccgtcgccgcggtgcctgcgcccttggccgcggaagtg
gtggggaggcggctgcgggtgtactggccgctggacgacgcgtggtacaaggggagggtg
gaggcctacgacgcggcctcccgcaggcaccgcgtgaagtacgacgacggcgccgaggag
aaggtcgatctcgggaaggagaagttcgagtgggaagccgccgttgaggactcgaccccg
cctccggcgaggaagctgcggatgtctgatacctcggtggcaaaatcaccggctgtggca
gaggatagcgcaggggattccactgaggacgaggactggaagagggatactgttgtggag
gatgattctgaggaggtggagctggatgaggaagacgatgaggaagttgtcgcaatgcga
gcgcgaaagggaaagccaaagaattccttgccgatgtcaggttcaacgccgtcgacattg
ggctctggtttgacatcagagtcggggtcaaaaatttcgaagaagaggaaaaacgtggat
gtggcctcattggattttgctaaaaggttcaccttcgaagcagttaataccactagaaaa
gttgacccagaagtgccaatgagctgtggccagaaggggcaaacgatggggaatgactac
actgctcttactggggatgcagctgagcgctttggacagcgggatgctgagaagttcaaa
ttccttggagaagggcgcaaagacgcaaaaggcagacgtcctggaagcccgggctttgat
ccgagaacgcttttattgccaccccagttcttgaagagtttgacaggagggcagagacaa
tggtgggaatttaaatcacagcacatggataaggttctgttcttcaagatgggcaaattc
tacgaactatttgagatggatgcacatgttggggcaaaggaccttgatcttcagtacatg
aagggtgaacagcctcactgtggattcccagagaagaatttatcagtgaatttggagaaa
ttagctgagaagggttatcgcgttctggttgtggagcagaccgaaacacctgagcagctt
gaacttcggcgtaaggagatgggtataaaggacaaggttgtcaggcgtgaaatatgtgca
gtggtcacaaaaggaacactgatagaaggagagcacctactggcaaacccagatccttca
tacctcctgtctgtgactgaaagtcaccaacaaagttcaaagaagagccaagacacttgt
accattggtgtttgcatagttgatgtttctacaagtaaatttattgtaggacagttccaa
gatgatccagagcgccatggattgtgttcaattttgtctgaaatgaggcctgtggaaatt
ataaaacctggtaaaatgctgagtccagaaactgagaaggcattaaagaacaacacaagg
aagcctttaataaatgagctgctcccgtccacagaattctgggacgcagcaaagactatt
gatgagataaagcagtactacagctcagccgataaacagaacaatgctgatgatatacaa
gactgtgtggactgtctgcctaacttattatgtgagttaattggagcaggtgataaaaca
tatgcactttctgctctaggaggttccttattttatttaaggcaaacccttctggatgag
aaaatacttccacgtgctgagtttgagccacttgcatgctcggggctcatcaacaatatc
cgaaagcatatgatacttgatgcagcagcgctggagaatctagaacttttagaaaatatg
agaactggtggcctctcagggaccctgtatgcacaattgaatcattgtgttactggattt
ggaaagaggttactcaaacggtggatcgcgaagccattgtatgatcgcagagcaatacta
cagcgtcaaagtgctgttgctactttcaagggagttggccaagattatgctgcccagttc
cgtaaggatttgtctaggctccctgacatggaacgcctgcttgcacgtcttttctcaagc
tgtgatgaaaacaagagaagttcatcagttgttctctatgaagatgcatcaaagagactg
cttcaacagtttactgctgcgcttcgggggtgccagcagatgttccatgcatgttcttct
attagtacattgatatgcacagagggatctcaacttaatgatttgctctcaccaggcaaa
ggtctaccaaatatctcatctattttagaccaattcagagatgcatttgattggtcagaa
gcagaccgcaatggtcggatcattccttgtgaaggttgtgatcctgactatgatgctact
tgctatgcaatagaagagatcaaatccagtctaaaagagtacctgaaggagcaacgaaag
cttttgagacctgcatcggttaattatgttgatgttggaaaagatatgtacctaattgaa
gtgcctgagattctgggaggttcagttcccagaaactatgagttgcagtgtacaaaaaag
ggtttctatcggtaccggacgccggtactgaaagaactaatattagaactttcaaaggtt
gagtcagagaaagaatcgaaattgaaaggcattcttcagaatctgattcagctatttgtt
gagcatcacactgagtggaggcagttggtttctgttgttgctgagcttgatgtattgata
agtcttgctattgcaagtggttattttgagggaccaagttgctgtccaactatcaaagaa
ttaaatggcccagacgatactcctactttccatgctagaaatcttggacatcccattcta
cgaagtgattccttaggcaagggttcatttgtaccaaacgatgttaagataggtgggtca
gggaatgccagctttattgttcttactggtccaaatatgggtggtaaatcaactctcctg
cgccaagtttgtcttaccattatattggctcagattggagcagatgttcctgcagaaagc
cttgagctttctcttgttgaccgtatctttgttcgaatgggagcaagggatcatattatg
gctggccaaagtacattcttggtggagctcgaggagactgcctcggtgctttcgtcagct
accaagaattctcttgtggtattagatgagcttggacggggtacgtcgacttctgatgga
caagctatcgcggcctcagttctggaatatctagttcatcaggtgcagtgtctaggcttg
ttttctacacactaccataggttagcaatggaacacaaggataccaaggtatcgttgtgt
catatggcatgcgaggtggtcgagggagaaggaggtctggaagaagtgactttcctttat
agattaacacgtggtgcatgccctaaaagctatggtgtaaatgttgctcgattagcagga
atacctacttcggtgcttcaaagagcgaatgaaaagtcaagtgactttgaggccaattac
gggaagcgacacaaaatgtccaaagataagcatgcaagtgcacagagcgatgacgagttt
tctgtcatcagggatttcttccgcgttgtgaaggcatggcctcgtcctgaagatcaggaa
gcgagtataagcatgctccgtgaattgcagaagcatgccaaggtaaaggctgtggaaggt
tag
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