Miscanthus floridulus: 136542341
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Entry
136542341 CDS
T10264
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03013
Nucleocytoplasmic transport
mflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136542341
03015 mRNA surveillance pathway
136542341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136542341
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136542341
5.6.2.5 RNA 5'-3' helicase
136542341
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136542341
mRNA cycle factors
Common to processing body (P body) and stress granule
136542341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
SRP54
PhoH
AAA_16
Ribosomal_S13_N
AAA_22
AAA_32
AAA_25
AAA
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
136542341
NCBI-ProteinID:
XP_066390824
LinkDB
All DBs
Position
3:125071472..125087343
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AA seq
1269 aa
AA seq
DB search
MATQPPSSAAAAVDLYETASQPDASAAGDAYTFLEFNTQGDDFDYPDFPELSQPPPRSTP
LTSSVPGAGASSSSWPAPPPPPSDAASPEPDLTPQDVPTPPASSSSPSPRSASKARSSAA
ADGLASGVAALSFEEPVGAGAGEDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKW
FCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKSEN
VVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQISAQQIN
KVEELWKTNPDASLEDLEKPGVDDEPQSVVLKYEDAYQYQNVFAPLIKLEADYDKMMKES
QSKDNVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYPGDSSHPTWQSVGHVIK
LTAQEEVALELRASQGVPTELNVGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHH
LLGHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAA
IVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQ
VRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGD
PRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQ
SLFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVP
NRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAY
IVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVA
LTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYND
RRLFLGGGQGVMHGAGASSQAADKRSGRGKGQSFVPYGPPNGVHKPGVHPAGYAVPRMPF
PPFPGAPHSQPYAIPTRGLHGPIGAVPPLHQPGSRNFGVPRSSTGGPIGGHLAHQQNSQQ
AMGGIGSNFNYTGMENPSSQPSGGAQMSQTGLMTQMPVQGLSQTFRDGFSIGGMSQDFFV
DDFKSQGSHVPYNIAEFSTQASQGGYGVEFTQAPQSGYSGSYMNQNAHPGYSHIGTTNDI
VSQDHMAHGSHGMFTQAGYNDPSQDESSQIHYGMAAAAPLQSQSMMNPLYSQSYAHYNTQ
PQSLQPPPQ
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccctcctccgccgctgccgcggttgacctctatgagacggcctcg
cagccggacgcctccgccgccggcgacgcctacacttttctcgagttcaacacgcagggg
gacgacttcgattaccccgacttcccagagctctcccaaccgccgcctcgatccacgccg
ctaacgtcctccgtccccggcgccggcgcgtcgtcctcgtcgtggcctgccccgccgccg
ccgccgtccgacgcggcctccccggaacccgatctcacgcctcaggacgtccccaccccg
ccggcctcctcctcctcgccgtcgccgcggtccgcctccaaggcgcgctcgtcggctgcg
gcggatgggctcgcctccggggttgccgcactcagcttcgaggagcctgtaggagccggc
gccggggaggacgggtacgactacggcaagggagacttcgtggaacacgcctgccggtac
tgcgggatccacaaccctgcgtgcgtggcgaggtgcaacgtgccctcctgccgcaagtgg
ttctgtaactcgcgggggaacacctctggctcccacattgtcaatcacctggttagggca
aagcataaggaagtgtgccttcacaaggatagccctttgggagaaacaattctcgaatgc
tacaactgtggttgtcggaatgtatttcttcttgggtttatctcagcaaagtcagaaaat
gttgtcgttctattatgcagagagccatgtttaagtgttaatgcactgaaggatatgaat
tgggatctcagccagtggtgcccacttatcgatgacaggtgtttcttgtcgtggcttgta
aaggtaccttcagagcaggagcagctaagagctcgccaaattagtgctcagcaaattaac
aaagtggaagagctctggaagacaaatcctgatgcatctcttgaagatcttgaaaagcct
ggtgtagatgatgaacctcagtcagttgttttgaagtatgaagatgcttaccagtaccaa
aatgtttttgcgccactgataaagcttgaggctgattatgacaagatgatgaaagagtca
cagagcaaggataatgtaactgtccggtgggatattgggttgaacaagaagcgtgtagct
tactttgtctttccaaaggaagacaatgagttgaggcttgtgcctggagatgagttacgc
ttgagatatcctggtgatagctcacatcccacatggcaatctgtgggacatgtgattaag
ctcactgcacaagaggaggtggcacttgagcttcgtgctagtcagggggtgcctactgag
ctaaacgttggattcagtgtggattttgtttggaagagtaccagttttgataggatgcaa
ggagcgatgaaaacttttgctgtggatgagacaagtgtcagtggatacatataccatcac
cttttgggacatgaagttgagcatcaaataatacgtaataccctgccaagacgctttggt
gcacctggacttccagaactaaatgcttcccaggttttagcagttaaaagtgtcctgcag
aagccagttagtttgattcaaggtccacctggcactggaaaaactgtcacatctgctgca
attgtgtatcacatggcaaaacaaggtcaaggacaggttcttgtatgtgccccaagtaat
gttgcagttgatcagttggcagagaagataagctcaaccggtctcaaggttgtcaggctg
tgtgcaaaatctagagaagctgtttcgtctcctgttgagcatctgacacttcattatcag
gttaggcaccttgatacctctgaaaagagtgaattgcacaagctacagcaactgaaagat
gaacaaggtgaattgtccagcagtgatgagaagaagtacaaggcactaaagcgtgccact
gaaagagagatactgcagagtgccgatgtcatttgttgcacctgtgttggtgctggagat
cctcgtctttcaaactttcgtttccgacaagttcttattgatgagtccacacaggcgaca
gaacctgaatgccttattcctttggtgcttggtgtcaagcaggttgtccttgtcggagat
cattgccaactgggtccagtcatcatgtgcaaaaaagcagcccgtgcagggttagcacaa
tctctctttgaacgccttgttatccttggagtgaagccattcaggctacaggtccagtat
agaatgcatccttgcctctcagagtttccatccaactgcttctatgaaggcacactgcaa
aatggagtgactgttaatgagaggcaatcgtctggaattgattttccttggcctgttcca
aatcggcctatgttcttctatgtgcagatgggacaagaagagatcagtgctagtgggaca
tcgtatctcaatagaactgaagctgcaaatgttgaaaaaattgtaacaacatttttaaga
agtggtgttgtaccaagccagattggagttatcacaccttatgaaggacaaagggcatac
atcgtaaattacatgtcaaggaatggctctcttcgccaacaactttacaaggaaatcgag
gttgctagtgtagactcatttcagggtagagagaaagactatattattctatcttgtgtt
agaagcaatgagcaccagggaattgggtttctcaatgatccgcgcaggttaaatgttgcg
ttaactcgtgcacgttatggcatagttattcttggtaatccaaaagtactaagcaagcag
ccactttggaatagcttgttgacacattacaaggagcatgagtgcttggtagaagggcct
ttgaacaacttaaagcagagtatggtgcaatttcagaagccaaaaaagatatataatgac
cggagattgttcctgggcggtggtcaaggtgttatgcatggggctggggcctcaagccaa
gcagcagataagagaagtggcagggggaaaggacaatcatttgttccttatggccctcca
aatggggtgcataagcctggtgtgcacccagcaggctatgctgtacctcgtatgcctttt
cctccatttcctggggctccacattctcaaccatatgcgattccgacccggggtttgcat
gggcccattggagctgttccaccgttgcatcaacctggaagtagaaactttggggtgcct
cgttcaagtactggtgggcctattggtggtcaccttgctcatcaacagaactcccagcaa
gctatggggggcattgggtcaaactttaactacactggcatggagaatccgagtagtcag
ccttctggtggagcccaaatgtcccaaaccggattaatgacacagatgcctgtccaagga
ctaagtcaaacattccgtgatggtttttccattggtgggatgtctcaggacttctttgta
gatgattttaagagccaaggatcacatgtgccatacaacattgcagaattttctacccag
gcttctcaaggcggttatggcgttgagtttactcaagcgccccaatctggatactctggg
agttatatgaaccaaaatgcacatcctggatactcccatattggtacaacaaatgacatt
gtatctcaggatcacatggcccatggatctcatggaatgtttacacaagcgggatataat
gatccctcacaagatgagtcatctcagattcattatggaatggctgccgctgccccccta
cagtcgcagagtatgatgaaccccttgtactctcaatcatatgcgcactataacacccaa
ccacagtctcttcaacctcctccccagtga
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integrated database retrieval system
