Miscanthus floridulus: 136542560
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Entry
136542560 CDS
T10264
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
mflo Miscanthus floridulus
Pathway
mflo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136542560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136542560
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
136542560
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
Motif
Other DBs
NCBI-GeneID:
136542560
NCBI-ProteinID:
XP_066391158
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All DBs
Position
3:complement(137096974..137106143)
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AA seq
942 aa
AA seq
DB search
MEGDDFTPEGGKLPEFKLDARQAQGFISFFKRLPQDPRAVRLFDRRDYYTAHGENATFIA
RTYYHTMSALRQLGSSSDGISSVSVSKAMFETIARNILLERTDCTLELYEGSGSNWRLTK
SGTPGNIGSFEDILFANNDMQDSPVIVALFPVCRESQLYVGLSFLDMTNRKLGLAEFPED
SRFTNVESALVALGCKECLLPEDCEKSIDLNPLREAISNCNVLLTEKKKADFKSRDLAQD
LGRIIRGSVEPVRDLLSQFDYALGPLGALLSYAELLADDTNYGNYTIEKYNLNCYMRLDS
AAVRALNIAERKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQ
ALVEDPELRQGLRQQLKRISDIDRLTHALRKKSSTLQPVVKLYQSCSRISYIKSILEQYN
GQFSTLIRSKFLEPLEEWMTEDRFGRFSSLVETAIDLDQLENGEYRISPLYSSDLGVLKD
ELCVVENHINNLHVDTASDLDLSVDKQLKLEKGPLGHVFRMSKKEEQKVRKKLTGIYLII
ETRKDGVKFTSSKLKKLSDQYQALFGEYTSCQKKVVDDVVRVSGSYSEVFENFAAVLSEL
DVLQSFADLATSCPVPYVRPEITASDEGDIVLLGSRHPCLEAQDGVNFIPNDCTLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDQASVSVRDCIFARVGAGDCQLHGV
STFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLMEVTRAPTLFAT
HFHELTALAHKNDDEHQHISNIGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVALAKSKAAELEDFSTTPTFSDDSKDEVGSKRKRVFSPDDVTRGAARARLY
LEDLAALPMDEMDRSKIVEMVTKMRDDLQKDAADNPWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgacgacttcactccggagggcggcaagctccccgagttcaagctagatgcg
aggcaagcgcagggtttcatctccttcttcaagaggctgccgcaggatccccgggccgtt
cgtctcttcgaccgcagggattattacaccgcccatggcgagaatgctacgtttattgca
aggacatactaccacacaatgtctgccttgcgtcaattaggtagcagctcagatggaatc
tcaagtgttagtgtgagcaaggctatgtttgagaccattgcccgcaacattttgttggaa
aggactgactgtacattagagctctatgagggaagtgggtcaaattggaggttaacaaag
tctggaacacctggaaatattggtagttttgaagacattctgtttgcaaacaatgacatg
caagattcaccagtcattgttgctttgtttccagtgtgccgggaaagtcagctgtatgta
gggcttagttttttggatatgaccaataggaagcttgggttagctgagttccccgaagat
agccgattcacaaatgttgaatcagctcttgtcgcattaggttgcaaggagtgtcttctc
ccagaagattgtgaaaaatccattgatctgaatccccttcgagaggccattagtaattgt
aatgttctgttgactgagaaaaagaaggctgacttcaaatccagggatcttgcacaagat
cttggtagaataatcaggggttctgttgagcctgtacgtgatctgctatctcagtttgac
tatgctcttggtccccttggagcacttttatcttatgctgagttgctagcagatgatact
aactatggaaattacacaattgagaagtacaatttgaactgctacatgcgacttgattct
gctgcagtgcgagcattaaacattgcagaaaggaaaactgatgtaaacaagaacttcagt
ttgtttggtttgatgaacagaacctgtactgttgggatgggaaaaagattgcttaacaga
tggctgaaacaacctctattagatgttaatgaaattaataaccgattagacatggttcag
gctttggtagaagacccagagcttcgtcagggactcaggcaacaacttaaaaggatatca
gatattgatcgtctaacacatgctctccgaaagaaatcatctacactgcagcctgttgtt
aagctttatcagtcctgtagcagaatctcatacatcaagagcattcttgagcaatataat
ggccaattttccacattgataaggtcaaagtttcttgaaccattagaagaatggatgaca
gaggatcgatttggtcggttttcttctcttgttgagacagctattgatcttgatcagctg
gagaatggagagtacagaatatctcctctatattcttctgacttgggtgtactaaaggat
gagctttgtgtggttgaaaatcacataaataatctgcacgtggatacagctagtgatcta
gatctttctgttgataagcaactgaagctagaaaaaggacctcttggacatgtgttcaga
atgtcaaagaaagaggagcagaaagtcaggaagaagctcactggcatctacttaatcata
gaaactcgtaaagatggtgtaaagttcacaagttctaagctgaaaaagctaagtgatcaa
taccaggcactgtttggtgagtacacaagttgtcagaaaaaggtggttgatgatgtagtg
agggtttcaggctcctactcagaggtatttgaaaattttgctgcagttctgtcggagttg
gatgttttacaaagttttgctgatttagcaactagttgcccagttccttatgttaggcca
gaaatcacagcgtcggatgaaggagatattgttctactaggtagcagacatccttgtcta
gaggcacaagatggtgttaactttatacccaatgactgcactcttgtgagagggaaaagt
tggtttcagatcatcactgggccaaacatgggaggaaaatccacatttataagacaggtt
ggtgtaaatgttttgatggcgcaagttggttcctttgtaccttgtgatcaagcaagtgtt
agtgtgagggattgtatttttgctcgtgttggtgctggtgattgccaacttcatggtgta
tctacttttatgcaagaaatgcttgaaacagcatccatcctaaaaggtgcctctgataag
tctcttataattattgatgagctgggacgtggaacttccacatatgatggatttggtctt
gcatgggctatctgtgagcatcttatggaagtgactcgagcgcctaccttgtttgccacc
catttccatgaattaactgcattagcacataaaaatgatgatgagcaccaacacatttca
aatatcggaattgcaaattatcatgtgggtgctcacatagacccatcaagtcggaagtta
actatgctttacaaggttgaacctggtgcatgcgaccaaagttttggtattcatgttgca
gaatttgctaattttccagaagctgttgttgcccttgcaaaaagcaaagcagcagagtta
gaagacttctctactacacctaccttttctgatgattcgaaagacgaggttggatcaaag
cgcaagagggtatttagcccagatgacgtcaccagaggagctgctcgggctcggctttac
cttgaggatctcgctgcattgcctatggatgagatggataggagcaagatcgtggagatg
gtcaccaaaatgagagatgatttgcagaaggatgcggctgacaatccttggcttcagcag
ttcttctga
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