Miscanthus floridulus: 136542626
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Entry
136542626 CDS
T10264
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136542626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136542626
Enzymes [BR:
mflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136542626
Spliceosome [BR:
mflo03041
]
Complex C
Other components
Step II factors
136542626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
RRM_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
IBR_1
Rcat_RNF216
zf-RING_UBOX
RRM_1
zf-RING_5
zf-C3HC4_2
AAA_19
AAA_22
zf-C3HC4_4
Arc_MA
zf-C3HC4
KH_Vigilin
Secretin_N
ABC_tran
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
136542626
NCBI-ProteinID:
XP_066391237
LinkDB
All DBs
Position
3:complement(140611720..140620047)
Genome browser
AA seq
1747 aa
AA seq
DB search
MRRSQDRGPFRPPDRIPRPPHHHRDHHYQNEHRYQPHSHPHRDRHYSTEHRYQPRAQHQR
DCRVQPSPPPSQFEVFLVRPGPDLSAPTAIEVEALVADLKSPVPASISVHSSGRHAARLV
FTSISDAAAAARELWALRLEGLHLLTLDLPHPALAAHASPQFASLFADHATRLLDSDLVA
LSAARSAELAASIRDVKQRLGSRNSFRDFHQLDLEKKTLESEKELIDAKIAEYKEAMWSI
QRAMSRGSGDKEEGVDLFGAVEGADVDFVRVHMMLLRECRRLKEGLPIYAYRRRILNYIF
ANQVMVLIGETGSGKSTQLVQFLADSGLSGGGSIICTQPRKLAAISLAHRVDEESKGCYG
DSSVLSYSTLLNYQGFGTKIIFTTDSCLLHYCTSDMSLDGISYIIIDEAHERSLNTDLLL
AMIKKKLLDRLDLRLIIMSATADADRLAEYFYGCPTFHVKGRTFPVEIKYVPDISAEASL
NSVPSISSVASATASYVTDVVQMVNIIHKNEEEGAILAFLTSQLEVEWACETFSDPNAVV
LPMHGKLSSVEQNLVFKSYPGKRKIIFCTNIAETSLTIREVKYVVDCGLAKEYRFVPSSG
LNVLKVNWISQSSANQRAGRAGRTGAGKCYRLYPESDFGMMEAHQEPEIRKVHLGTAVLR
ILALAVTDVKYFEFIDAPDPEAINMAVHNLEQLGAIEYKCSGFELTDTGRDLVKLGIEPR
LGKIMLDCFSYGLMKEGLVLASVMANASSIFCRVGTNEEKYKADRLKVPFCHPDGDLFTS
LAVYKKWEAGHDNKNMWCWQNSINAKTLRRCQETISELEKCLKHELNIIVPSYWSWNPEK
PTVHDTSLKKIILSSLRGNLAMFSGHEKFGYQVISADQPVQLHPSCSLLTYGSKPEWVVF
SEILSVPNQYLVCVTAVDRNDVLTVHPFIKPLEESKLQRKVITGIGNKSLRRFCGKCGQN
LQKIISLLREDCRDDRIMVDLDFSSSEVLLFAKEHDMETVFCMVNDALEFEAKMLRDECD
ERRSGGCTIALFGSGAEIKHLELGKRHLTVEIQHQNAHDIDEKELIALVYSRVPGIANFH
KLGNFQTNADETKWGRFTFLKPDYADHAISKLNGIEFHGSSLKVGPVNAYNHSGLPFPAV
RAKVSWPRKPSRGLALVTCASGEAEFVVKDCFGLGVGGRYINCEVSKKYANCVFVTGVPL
HVTEPELYDAFRSTTTRRILDIHLLRGPPPTASSSDSECAEALMRAISLFMPNRNFPGQN
FRVHVFPPEEKDSMMRATISFDGSFHREAARALDHLQGSVLPCCFPWQIIQCQHVFHSTV
SCPMRIYNVISQEVGVLLESFRSQKGVSYNLEKNENGNFRVKLTANATKTIADLRRPLEL
LMKGKIINHPDLMLSTVQLLWSRDGMEHLKSVEQETGTYILYDRQSLNIKVFGSSDKVAA
AEEKLVRALVQLHEKKPLEVCLRGRNLPPNLMKEVIKKFGADLEGLKNEVPAVDLQLNTR
RQALYVRGSKEDKQRVEEMISELIASSDHNAPLPSKNACPICLCELEDPFKLESCGHMFC
LACLVDQCESAIKSQDGFPLCCLKNGCKKLLLLTDLRSLLPDKLDELFRASLNAFVASSA
GLYRFCPTPDCTSIYQVAAAGAEDKPFVCGACSVETCTKCHVEYHPFISCEAYKEYKADP
DARTLLEWRKGKENVKNCPSCGYTIEKAEGCNHVECRCGSHICWNCLENFKSSEECYGHL
RSVHLSY
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgatctcaggaccgcggacccttccgcccgccggatcggatcccacggcctccc
caccaccatcgcgaccaccactaccaaaacgaacaccggtaccagcctcactcacacccc
caccgcgaccgacactacagcaccgaacaccggtatcagccccgcgcccagcaccagcgc
gactgccgcgtgcagccgtcccctcccccctcgcagttcgaggtattcctcgtccgcccg
ggccccgatctgtccgccccgactgccattgaggttgaggccctcgtcgcggacctcaag
tcgccggttccggccagcatctccgtccactcctccggccgccatgccgcgcgcctcgtc
ttcacctccatctcggacgccgcggccgccgcgcgcgagctgtgggcgctccgcctcgag
gggctccacctcctcaccctggacctaccgcacccggccctcgccgcccacgcctcgccg
cagttcgcctcgctcttcgcggaccacgccacccgcctcctagactccgacctcgtggcc
ctctcggccgcccgctccgccgagctcgcggcgtccatacgggatgtaaagcaacgtctg
ggctcgcgtaacagcttccgcgacttccatcagctggacctcgagaagaagacactggag
tctgagaaggagttgatcgatgccaaaattgccgagtacaaggaggcgatgtggtcgata
cagcgcgcaatgtcgcgcggatcgggggacaaggaggagggtgtcgacttgtttggggct
gtggaaggtgcagatgtggactttgtgagggtgcatatgatgctgctgcgtgagtgccgg
aggcttaaggagggcctgccgatctatgcataccgcaggaggattcttaattatattttc
gctaaccaggtcatggtcttaataggagaaacaggttctgggaagagcacacaactggtt
cagtttcttgctgactcaggtctttctggtggtggttccatcatctgtactcaacctcga
aagcttgctgctatatctttagcacatagagtcgatgaagaaagtaagggttgttatggg
gacagttctgtgctgtcatattcaaccttactaaattatcaaggttttggcactaagatt
atattcaccacggacagttgtcttctgcattactgcacgagtgatatgagtctggatggc
atttcatatattattatagatgaagctcatgaaaggagcttgaatactgatcttctgtta
gctatgatcaagaagaagctgcttgataggctggatttgcggctcattataatgtctgcc
actgctgatgctgacagacttgctgaatatttttatggctgtccaacatttcatgttaaa
gggcgaacttttcctgttgaaattaaatatgtccctgatatatcagcagaggcttcattg
aatagtgtaccaagtatttcttctgttgcttctgctactgcttcctatgttactgatgtt
gtacaaatggtaaacataatccacaagaatgaagaagagggtgctatactcgcttttttg
acatctcaactggaagtagaatgggcctgtgaaacattcagtgatccaaatgctgtggta
cttccgatgcatggaaagctttcttctgtagaacagaatcttgtcttcaaaagctaccct
ggaaagagaaagattatcttctgcacgaatatagctgaaacatcattgacgataagagaa
gtgaagtatgttgttgattgtggcttggccaaagaatacagatttgttcccagtagtggt
ctcaatgtactcaaagtaaattggatttcccaaagctctgctaatcaacgtgctggccgt
gctggccgaaccggagcagggaagtgttacaggctctaccctgaatctgacttcggtatg
atggaagcgcatcaagaacctgaaattcgtaaagttcatctcggcaccgctgttctgaga
atacttgctttggccgttacagatgtaaaatattttgagtttattgatgccccagatcct
gaggctatcaatatggctgtgcataatcttgaacaacttggtgctatagaatataaatgc
agtggatttgagctaactgacactggacgtgatctggtcaaattgggcattgagccaagg
cttgggaaaatcatgcttgattgcttcagctatggtttgatgaaagaaggtttagtccta
gcctctgttatggcaaatgctagtagcatattttgtagagtgggtactaatgaggagaaa
tataaagctgaccgtctgaaagtccctttctgtcaccctgatggagaccttttcacttca
cttgctgtttataagaagtgggaggctgggcatgataacaaaaatatgtggtgctggcag
aatagtatcaatgccaagaccctgaggaggtgccaggaaactatatctgaacttgaaaaa
tgtctaaagcatgagctaaacattatcgttccaagttactggagttggaaccctgagaag
cctactgtgcatgatacttcactaaagaagattattctatcatctcttagaggtaatctt
gctatgttttctggacatgagaaatttgggtatcaggtgatttcagcagatcagcctgtg
caacttcacccttcatgctcattgttgacttatggcagcaagcctgaatgggtggtattt
tcagaaatcttgtcagtcccgaatcaatatttggtatgtgtaactgctgttgatcgtaac
gatgtgttgacagttcacccttttattaagccactggaggagagtaaattgcagaggaaa
gtgattactgggattggaaataaatcgctgagaagattttgtggtaaatgtggccaaaat
ctgcagaaaatcatctcacttctgagagaagattgcagagatgaccgcataatggttgat
ttagacttcagtagcagtgaagttttattatttgctaaagaacatgacatggaaacggtc
ttttgcatggttaatgatgctttggaatttgaagctaaaatgctgagggatgaatgtgac
gagagaagatctggtggctgtactattgcattatttggctctggtgctgaaatcaagcat
ttggaacttgggaagagacatctaactgtggagattcagcatcaaaatgctcatgatata
gatgaaaaggaacttattgctttggtatattctcgtgttcctggtatagcaaattttcat
aaactcgggaattttcagacaaatgcagatgaaacgaagtgggggaggtttacattcctc
aaaccagattatgctgatcatgccatttcaaaattgaatgggattgagtttcatggttcc
tcactaaaggtgggtcctgtaaatgcttacaaccactcagggctaccatttcctgcagta
agagctaaagtttcttggccacgtaagccaagcaggggacttgcacttgtaacatgtgct
agtggggaagctgaatttgttgtaaaggactgctttggccttggagttggtggaaggtat
atcaactgtgaggttagtaaaaagtatgcaaactgtgtctttgtcacgggggttccattg
catgtaacagagccagaattgtatgatgcttttcgtagtacaaccaccaggagaatcctt
gacatccacttacttagaggaccgccccccacagctagctcttctgattctgaatgtgca
gaagcactgatgagagcaatatcactattcatgccaaataggaattttcctggccaaaat
tttcgtgttcacgtgttccctccagaagagaaagattcaatgatgagagctaccatatcc
tttgatggaagttttcacagagaggctgcaagagcactggaccatcttcaaggaagtgtt
cttccttgttgttttccttggcagataatccagtgccagcatgtatttcatagtactgtc
tcctgtccaatgcgcatatacaatgtcatcagccaagaagttggtgttctacttgagagc
ttccgtagccaaaaaggtgtgtcatacaatttggagaagaacgagaatggtaatttccgt
gttaagcttactgcaaatgccacgaaaacaatagcagatttgagaaggcctcttgagctt
ttgatgaaaggaaaaattataaaccatcctgatctgatgttaagcacagttcaactgcta
tggtcccgtgatggtatggaacatttgaaatcagttgaacaggagaccgggacttacatt
ctgtacgacaggcaaagtctgaatattaaggtctttggcagcagtgataaggtggctgca
gcggaggaaaaattggttcgtgcacttgtacagctccatgagaagaagcctcttgaagtt
tgtcttcgtggccggaacctcccaccaaacttgatgaaggaagtgattaaaaagtttgga
gctgatttagaaggactgaagaacgaggttcctgcagtagatcttcagttaaatacacga
aggcaggcactttacgttcgaggcagcaaggaggacaagcaaagggtggaagagatgatc
tctgaactgatagcctctagtgaccataatgctccactgccatcaaagaatgcctgtcct
atttgcctgtgcgagctagaagatccttttaagcttgaatcctgtggtcatatgttttgt
ttggcatgcttggtggatcagtgtgaatctgccataaaatcgcaagatggcttccctctt
tgttgcctcaaaaatgggtgcaagaagctcctcctcctaactgatctgaggtctctcctg
cctgacaagctggacgagctgttcagggcttccttgaatgcatttgttgcatctagcgca
ggattataccgtttctgccccacacctgactgcacatccatttaccaagtagctgctgca
ggcgcagaagacaaaccctttgtctgtggggcttgctctgtggagacctgtaccaagtgc
catgtcgagtaccatccttttatctcttgtgaggcatacaaagagtacaaggcagacccg
gatgcgaggactctgcttgaatggcgcaaagggaaggagaatgtaaagaattgcccttca
tgtggatatacaattgagaaagctgaaggttgcaaccatgttgagtgtaggtgtggcagc
cacatttgttggaattgcttggagaacttcaagagcagtgaggagtgttatggccatctc
aggtctgtgcacttatcctattag
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integrated database retrieval system
