Miscanthus floridulus: 136542692
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Entry
136542692 CDS
T10264
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mflo Miscanthus floridulus
Pathway
mflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136542692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136542692
03041 Spliceosome [BR:
mflo03041
]
136542692
Messenger RNA biogenesis [BR:
mflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
136542692
Spliceosome [BR:
mflo03041
]
Complex B
Other components
Prp19-related factors
136542692
Complex C
136542692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
PPR
TPR_12
ARM_TT21
ARM_TT21_C
UTP6_C
TPR_15
Motif
Other DBs
NCBI-GeneID:
136542692
NCBI-ProteinID:
XP_066391329
LinkDB
All DBs
Position
3:complement(144269873..144275228)
Genome browser
AA seq
928 aa
AA seq
DB search
MPSASGPVAVASASAAAKAAPSVAVGISPDLYPTEDDLPYEEEILREPFKLKGWWRYLVA
RAAAPFAKRAVIYERALKALPGSYKLWHAYLRDRLDHARPHPIDHPAYSSLNNTFERALA
TMHKMPRVWVLYLTSLLDQRLLTRARRSFDRALRALPVTQHDRIWPLYLRLASLPACPVE
TSLRVFRRYLQFDPSHAEDFINFLISANHWQEAANRLASVLNDDGFRSVKGKTRHQLWLE
LCEILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRGLFEKARDIFEEGI
SSVVTVKEFSVVFEAYTQFEQSMLAAKLEAAEEEGGEDENEGGGRKSGLDKLSRKFLDEF
WLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPARQVATYV
EAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEW
AEMELRHNNFDKAIELMRQATAEPSVEVKRRAAADGDEPVQMKVHKSLKMWSFYVDLEES
LGTLDSTGAVYERILDLRIATPQIILNYAYLLEEHKYFEDAFKVYERGVKIFKYPHVKAI
WVTYLTKFVQRYKRSKLERARELFHEAVQQAPPEEKKPLYLQWAKLEEDYGLAKRAMNVY
DEAVRAVPNSEKMAMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVLTMCMKFAELE
RSLGEIDRSRAIYVHASNYSDPNNPDFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQ
THFILPEYLMQRDQRLNLDEAVDTLKRAGVPEDEMAALERQLAPGPSTAPPAAPSTAPAS
ANRMMNFVSAGVEAQAESSRQQAGNNEDIELPDESDDEEPDVQIAEKSVPAAVFGELGKR
AAENNEESSGAQGNEQLGALERIKRRRQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcagcgtcgggtccggtggccgtggcgtcggcttcggcggcggcgaaggccgcg
ccgtctgtggccgtcgggatctcgccggacctgtacccgacggaggacgacctgccctac
gaggaggagatcctgcgggagcccttcaagctcaaggggtggtggcgctacctcgtggcc
cgcgccgccgcgccgttcgccaagcgcgccgtcatctacgagcgcgccctcaaggcgctc
ccggggagctacaagctctggcacgcctacctccgcgaccgcctagaccacgcgcgcccg
caccccatcgaccacccggcctactcctccctcaacaacaccttcgagcgggcgctggcc
accatgcacaagatgccgcgcgtctgggtcctctacctcacctcgctgctcgaccagcgc
ctgctcacgcgcgcacgccgctccttcgaccgcgccctgcgggcgctccccgtcacgcag
cacgaccgcatctggccgctgtacctccgcctcgcctcgctcccggcctgccccgtcgag
acgtcgctccgagtcttccgccgatacctccaatttgacccctcccacgccgaggacttc
atcaacttccttatatccgccaaccactggcaggaggccgccaaccgtctagcttcagtg
ctcaacgacgacgggttccgctccgtcaaggggaaaacaaggcaccagctctggctcgag
ctctgtgagatcctcaccaagcatgctgatgaggttgccggcctcaaggtggatgccatc
ctgcgtggcgggatacgcaagttcaccgatgaggtcggcaagctttggacctcactggct
gattactatgtcaggagaggccttttcgaaaaagctagggatatatttgaggagggcatt
tcttcagtggttaccgtcaaggagttcagcgtggtgtttgaggcatatacacagtttgag
cagagtatgcttgcggcaaagctggaggctgctgaggaagaagggggtgaggatgagaac
gagggaggtggcaggaagagtgggttggataagttatcaaggaaattcctcgatgaattc
tggttgaacgatgaggatgatactgatttgaggatggcaaggtttgagcggctgttggat
cgcagaccagagcttcttagcagtgtgctgttgcgacagaatccacacaatgtggaggag
tggcacaggagggtgaaactctttgaaaaggatcctgcgaggcaagtagcgacatatgtt
gaggccgtgaaaactgtagacccaatgaaggcagttgggaagccccatactctgtgggtg
gcatttgcaaagatgtatgagaaacacaatcgtctagatagtgctgaagatattttcaaa
cgggctactcaagtgaattataaggcagttgaccacttagccagtatctggtgtgagtgg
gcagagatggagctgcgccacaacaattttgacaaggctattgagctgatgaggcaagca
acggcagagccctctgttgaggttaagaggcgggctgctgctgacggggacgagcctgtc
cagatgaaagtgcacaaatctttgaaaatgtggagcttttatgttgatctggaggagagc
cttggaaccttagactctaccggtgcagtttatgagagaatattggatttacgaattgcc
actccacagataattctcaattatgcatatcttcttgaggagcacaagtatttcgaagat
gcatttaaagtgtatgaaaggggcgtgaaaatattcaagtatccccacgttaaggccatt
tgggtgacctaccttacaaagtttgtacagagatacaagagaagcaagttagaacgagca
agagagcttttccatgaagctgtccaacaggctcctccagaggaaaagaagcctctatat
ttacaatgggcaaaactggaggaagactatggtcttgccaaacgtgctatgaatgtatat
gatgaagctgtaagagctgttcctaacagtgaaaaaatggctatgtatgaaatctatata
gcacgtgctgccgaactcttcggtgttccaaggacaagacaaatatatgagcaagcaatt
gaatctggcctcccagacagagatgttctgacaatgtgcatgaaattcgctgagttagag
agaagccttggggaaattgatcgttcgcgtgccatctatgtgcatgcatccaactattct
gatccaaacaatcctgacttttggaagaagtggaatgattttgagattcagcacggtaac
gaagacacattcagggagatgcttcgtatcaaacgtacagtggctgctagccgcagtcag
acacatttcatactaccggagtacttgatgcagagggatcagaggttaaacctggacgaa
gcagttgacactctgaagcgtgctggcgtccctgaagatgagatggcagccttggaaagg
caactggctcccggaccatccactgcaccaccagcagcaccaagcactgccccagcctct
gctaacaggatgatgaactttgtcagtgctggagtagaggcgcaggccgagagcagcagg
caacaggctggtaacaatgaggacattgagctgcccgacgagagtgacgacgaggaaccc
gatgtccaaattgcagagaagagtgttcctgctgcggtatttggtgagcttggcaagaga
gctgccgagaacaatgaggaaagctcaggtgcccaagggaacgagcagctgggcgccctc
gaaaggataaagagacggcgccaatag
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