Miscanthus floridulus: 136544789
Help
Entry
136544789 CDS
T10264
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136544789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136544789
03016 Transfer RNA biogenesis [BR:
mflo03016
]
136544789
Enzymes [BR:
mflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
136544789
Messenger RNA biogenesis [BR:
mflo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
136544789
Transfer RNA biogenesis [BR:
mflo03016
]
Prokaryotic type
tRNA degradation factors
136544789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
136544789
NCBI-ProteinID:
XP_066392953
LinkDB
All DBs
Position
3:3302985..3321117
Genome browser
AA seq
884 aa
AA seq
DB search
MLACPAALHLLLPAPPPPHHLHHHHVAFPAPPLHASLPCSRRARRRAPCPRHGVARASAT
VAEEASGSGPAKLSVRIPVGDREILVETGHIGRQASASVMVTDGETILYCSVCLADTPND
PADFFPLSVHYQERLSAAGRTSGGFFKREGKTKDHEVLVCRLIDRPLRPTMPKGFYYETQ
ILSWVFSYDGIHSPDCLAITAAGIAVALSEIPNKQTIAGVRIGLINDQFVVNPTTEQMEN
SELDLMMAGTDSAILMIEGYCDFLTEEKLLEAVEAGQVAIREICKTIDVLVQSCGKKKMV
DAISLPPPELYRHVEDISGDELVKALQIKGKIPRRKALSALEDKVISILSEQGYVSKDGS
SGVTESLADIVEDEDEDEIIVDGEVDEGDVHIKPVSRKPPPQLFAEVDVKLVFKEVSSKY
LRRRIVEGGKRSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQR
IDNLVDTEDSKSFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPPEEDFPY
TIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGSPLI
LSDITGAEDASGDMDLKIAGNESGISAFQMDIKVVGITLPVMEQALLQARDGRQYILNEM
SKSSPPPSKALSPYAPLIHVMKVKPNKVNLIIGFGGKTIKSIIEETGVDAIDTGDDGTVK
ITARDLSSLEKSKTIIANLTMVPKVGEIYRNCEIKSIAPYGAFVEIAPGREGLCHISELS
SGWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDADSESNSGSTKEKAPQKDDA
IKMTSRTPRRKRQSELSGAENATTRTLEKSAASPAGSKGSEAVK
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgtgccccgccgcgctccacctcctcctcccggcgccgccgccgccgcatcac
ctccaccaccaccacgtcgccttccccgcgccgccgctccacgcctcgctcccgtgctcg
cgccgcgcgcggaggagggcgccctgtccaaggcatggagtcgccagggcctccgccaca
gtggcggaggaggccagcggttccggaccggccaagttgtccgtgaggatccccgtcggc
gaccgcgagatattggtcgaaacaggccacattgggaggcaagcgagtgcttctgtaatg
gtcactgatggcgaaacgattctctactgttctgtctgtctggcggatactccaaatgac
cctgctgactttttccctttatcggttcattatcaagagcgcctttcagctgctggaaga
actagtggtggtttcttcaaacgagaaggcaagacaaaagaccatgaggttttggtttgc
agattgatagacaggcccctacgacctactatgcctaaggggttctactatgaaactcaa
attctatcctgggtcttcagttatgatggcattcactccccggactgcttggctatcaca
gctgctggtatagccgtggccctctctgaaattccaaataaacaaacaattgctggagta
agaattggcctgattaatgaccagtttgttgttaacccaactactgaacagatggagaat
tcagagttagatttgatgatggctgggactgatagtgccattttgatgattgagggttac
tgtgattttctgactgaggagaagctgcttgaagctgtggaagctgggcaggtggcaatt
agagaaatctgcaaaacaattgatgttcttgtccagagctgtgggaagaagaaaatggtc
gatgctatcagcctaccgcctcctgaactctacaggcatgttgaagatatttctggagat
gagttggtgaaggcattacaaataaaaggaaagattcccagaagaaaagctctttcagca
ttggaggacaaagttataagtatactttctgaacagggttatgtttccaaagatggctca
tctggagtcactgaaagtttggctgatattgttgaggatgaggatgaggatgaaattata
gttgatggagaagtagatgaaggtgatgttcacatcaagccggtttcaaggaagccccct
cctcagctatttgcagaagttgatgtcaagctagtcttcaaggaagtttcatctaaatat
ttacgaaggcgcattgtagagggaggaaagcgaagtgatggacggagtccttgggaactt
cgacccattaattctcaatgtggtttacttccaagagctcatggtagtgctctgttcacg
aggggagaaacacagtcactggctgtggtcactttaggtggctatcagatggcacaacga
attgacaaccttgttgatacggaggattcaaaaagcttctatcttcagtactcatttcct
ccatcatgtgttggcgaagttggtcgaattggagcacctagccggagagagattggacat
gggatgcttgcagaaagggcactggagccaattttacctccggaagaggattttccgtac
actattcgtgtcgagagtactatcactgaaagtaatggttcgtccagcatggcttctgtt
tgtgggggttgtttagcacttcaagatgctggggttcctataaagtttcctgttgctgga
attgcaatgggcctggtccttgatacacaggaatttggtggagatggtagcccacttata
ctttctgatattactggagctgaagatgcctctggtgacatggatttgaagattgctggt
aatgaaagtggcatatctgcatttcagatggacattaaggtagtcgggataactctacct
gtgatggagcaagcactccttcaagctagggacgggagacagtatattctgaatgaaatg
tcgaaatcttcacctccaccatcaaaagcactatctccatatgctcccttaattcatgtt
atgaaggtcaaacctaacaaggtgaatttaataattggttttggtggaaagacaataaaa
agcataattgaggagactggagtagatgctattgataccggagacgatggcacggtaaaa
attactgcaagagacctatcaagcttagagaagtcaaaaactataatagctaaccttacc
atggttccaaaagttggagaaatatacaggaattgtgagatcaagtcaatagctccatat
ggcgcttttgttgaaattgctccagggcgtgagggtttatgtcatatcagtgagttaagt
tcgggctggttggccaaggctgaggatgcttttaaagtcggagatcgcatagacgtcaag
cttattgagataaatgataagggtcaacttcggctaagttctcgagctttgcttcctgat
gcggattcagaatccaacagcggttcaacaaaagaaaaggcgccgcaaaaagatgatgcc
atcaagatgacatcaaggacacccaggcgcaagagacagtctgagctgtctggagctgaa
aatgccacaacaaggactcttgagaaaagtgccgcttctccagctggttcaaagggtagt
gaagctgtgaagtag
DBGET
integrated database retrieval system
