Miscanthus floridulus: 136545337
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Entry
136545337 CDS
T10264
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU70-like
KO
K10884
ATP-dependent DNA helicase 2 subunit 1
Organism
mflo Miscanthus floridulus
Pathway
mflo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
136545337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mflo03041
]
136545337
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136545337
Spliceosome [BR:
mflo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
136545337
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
136545337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku_N
Ku
Ku_C
SAP
SAP_new25
DUF6887
HeH
Motif
Other DBs
NCBI-GeneID:
136545337
NCBI-ProteinID:
XP_066393454
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All DBs
Position
3:29407791..29425907
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AA seq
628 aa
AA seq
DB search
MDLDPEGIFRDDSDEDEDTVQEREANKEMVVYLVDASPKMFTLATTQDNEKQETHFHTIV
SCITESLKTQIIGRSYDEVAICFFNTKEKKNLQDSAGVYVYNVGDREELDRPTAKLIKDF
SSIEDSFMSTIGSRYGITSGSRENTLYNALWVAQALLRKGSVKTVSKRILIFTNEDDPFG
TITGAVKTDMIRTTVQRAKDAQDLGLSIELLPLSRPDEQFDMSLFYADLIGLDGDEITEY
LPSAGVRLEDMTNQLRKRIMKKRRVKTLSFAITNDVCIEVNTYALVRPTTPGTITWLDSL
SNLPLKAERSFICNDTGALLQDAQTRFQMYNDTIVKFSVHELSEVKRVASHHLRLLGFKP
LDCLKDYHNLRPSTFIYPSDQRIFGSTCVFVALHSSMLRLGRFALAFYGNPTRPQLVALV
AQEEVTSSGGQFEPPGMHMIYLPYSDDIRYPEEVHVTYGDAPRATDEQIKKASNLFKRID
LKNFSACQFANPALQRHYGILEALALGEDEMPDIKDETLPDEEGLSRPGVVKAIEEFKTS
VYGENYDQEEAEAAAGKASRGDASKKRKEITDAAAQISAAYDWAELADNGKLKQMTAAEL
KSYLTAHDLPVSGKKEVLVSRILTHLGK
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggacctagacccagagggcatcttccgcgacgacagcgatgaagacgaagacaccgtc
caggagagggaggcgaacaaggagatggttgtctaccttgtcgacgcctcgcccaaaatg
ttcacccttgctaccacccaggacaatgaaaagcaggagacacatttccacaccattgtt
agctgcatcacagagtctctaaagacacaaattattggtagatcttacgatgaagtcgca
atatgtttctttaacactaaagagaagaagaatttacaggactcagctggtgtttatgtt
tataatgttggagacagagaagaacttgataggcccactgcaaaacttatcaaagatttt
tcttccatagaagattcttttatgagcaccattggaagtcgatatggaataacatctgga
tctcgagagaataccctgtataacgctctttgggttgctcaggctctgctgcgcaaggga
tctgtgaagaccgtcagtaaacgaattcttatattcaccaatgaagatgatccttttggt
actattacaggagcagtgaaaactgatatgattaggacaacagttcaacgtgcaaaggat
gcacaagatcttggcctgtctattgaacttcttccactgagccggcctgatgagcagttc
gacatgtccctgttttatgcagatttaattggtctggatggggatgagataaccgagtat
ttgccatctgctggtgttaggctagaggatatgactaatcaactgagaaaacgaataatg
aagaagcgcagagtcaaaactctttcatttgcaatcacaaatgatgtgtgcatagaagtg
aatacatatgcgctggtccgtcctactactccagggacaatcacatggcttgattcacta
agtaaccttccattaaaggctgagaggtctttcatatgcaatgatactggggctctactt
caggatgcacagacacgtttccagatgtacaatgacacaattgtcaaattttctgtacat
gaactctctgaggttaaaagggttgcaagccatcatcttcgccttttaggtttcaagcca
ttagattgcttgaaagattatcataacttaagaccatcgacatttatttatccgagtgat
cagcgtatatttggaagcacttgtgttttcgttgctttgcatagctcaatgttacgtctt
ggaaggtttgcacttgcattttatgggaatccaactcgaccacagctcgtagcccttgtt
gctcaagaagaggttacttcctctggtggccagtttgaaccgcctggcatgcacatgatc
tatcttccatactccgatgatattagatatcctgaagaagttcatgtgacttatggtgat
gcaccacgtgcaacagatgaacaaatcaagaaagcttcgaatctattcaaacgtattgat
ctaaaaaatttctctgcatgccaatttgctaacccagctttgcaaagacactatgggatc
ttggaggccttagctttaggcgaagatgagatgcctgatataaaggatgagaccctgcct
gacgaagaaggcttgtctaggccaggggtagtcaaagctattgaggaattcaagacttca
gtctatggtgaaaattatgaccaagaggaggcagaagcagcagcagggaaagcttcccgt
ggtgatgcttcaaaaaagaggaaggaaatcactgatgcagctgcgcagataagtgctgct
tatgattgggcagaacttgcagacaatggaaaactgaagcaaatgacggcggcggaattg
aaatcctacctgaccgcgcatgacctcccggtttctggtaagaaagaggtacttgtcagc
aggatcttgactcatctgggcaagtga
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