Miscanthus floridulus: 136546687
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Entry
136546687 CDS
T10264
Name
(RefSeq) transcription factor bHLH140-like
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
136546687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136546687
Enzymes [BR:
mflo01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
136546687
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
136546687
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
136546687
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
136546687
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
136546687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
nSTAND1
Zeta_toxin
ABC_tran
SMC_N
RsgA_GTPase
AAA_29
AAA
AAA_16
AAA_21
nSTAND3
Dynamin_N
Motif
Other DBs
NCBI-GeneID:
136546687
NCBI-ProteinID:
XP_066394746
LinkDB
All DBs
Position
1:complement(165732567..165740189)
Genome browser
AA seq
788 aa
AA seq
DB search
MDPDAGGSSSAPPPPSATIGACAETKEEERGRKEVVVVLVGPSGSGKSSFAEAVVGGSTA
GRHWVRVCQDTIGNGKAGTKIQCLKAASDALKEGKSVLIDRCNLEREQRADFVKLGSTLH
ADVHAVSLDLPAKVCISRAVSRKGHDGNLQGGKAALVVNRMLQKKETPLLTEGFSRIMCC
NDDGDIKKAVDLYNDLGPSDSLPSGVFGQKSKRPVQVGIMKFLKKADASSVETSSGPKLA
LTEIKPAQQNPLPKQENVEAGFACPMEVEKGLNDKMENEEHAKESDYCDVGSRTLAFPSI
STADFQFDLDRASDIIVDTAANFLQKFDNIRLVLVDLSEKSRILSLVKQKAAKKSIDSNR
FFTCVGDITQLHTRGGLQCSVIGNAANWRLKPGGGGVNAAIYNAAGESLQHATKKCADAL
RPGTSVVVPLPSTSPLRQREGVTHVIHVLGPNMNPMRPDYLKNDYTRGSKILREAYNSLF
ENFASIVQSYMGKQNSESGAEKSASGGTSPNDTKMKREDSHGSERMKKHKLFQPIMTAKQ
QHECTKVNASNCHDDAMTSSAVPSQTRQVDNRRNDVVTSKTWGSWAQSLYELAMNPEKYK
NSDSILETSDEYIVLKDLYPKAKRHILVISRMDGLDSLADVKKEHLPLLRRMHSAGVKWA
QKFLEEDAALEFRLGYHSVPSMRQLHLHIISQDFNSASLKNKKHWNSFTTSFFRDSVDVI
EEIEQNGSTTTSTDEKVLAMELRCHRCRSAHPNIPKLKSHIAICKSSFPSHLLQKNRLLS
STMHMDRT
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggatcccgacgcgggaggctccagctccgctccaccacctccgtcggcaaccataggc
gcgtgcgcggagacgaaggaggaggagcgcggccgcaaggaggtggtggtggtactggtg
ggcccatcgggcagcggcaagtcctcgttcgccgaggccgtagttggcggctccaccgcc
ggccgccactgggttcgcgtctgccaggatacaattgggaacggcaaagctgggacaaaa
atacagtgcttgaaggctgcatcagatgctttgaaggagggcaagagtgttctcattgac
cgctgtaacttggaacgcgagcagcgtgctgattttgtgaagctgggcagcacattgcac
gcagatgtgcatgctgtctccctggatctacctgcaaaggtctgtatctcacgtgcagtg
agccgaaagggtcatgacggcaatctgcagggtgggaaggctgcccttgttgtcaaccgc
atgctgcaaaagaaggagacacccttgctcacagaaggtttcagtcggatcatgtgctgt
aatgatgatggcgacattaaaaaagcagttgacttgtataatgatttagggccttcagat
agtcttccatcaggagtttttggtcagaagagcaaaagacccgtacaagttggtataatg
aagtttctaaagaaagctgatgcttccagtgttgagacatctagtggacctaagcttgca
ttgacagaaataaagccagcacagcaaaatcctttgccaaaacaggaaaatgttgaagct
ggttttgcctgcccaatggaagttgagaaggggttgaatgacaagatggaaaatgaagag
catgctaaagaaagtgattattgtgatgttggttcccgtactctggcatttccatctatt
tctactgccgacttccagtttgatcttgacagagcatctgatattatagtggacacagct
gctaatttcttgcagaagtttgataatataagactagttcttgtagacctgagcgagaaa
tcaagaattttgtcattggtcaaacagaaggctgctaagaagagcattgactccaacaga
tttttcacatgcgtgggagatatcactcagttgcacacaagaggaggtcttcaatgcagc
gtgattggtaatgctgccaattggaggctaaaacctggaggtggaggggttaatgcggca
atatataatgctgctggagaatctttacaacatgcaactaaaaaatgtgctgatgcactg
aggccaggaacctctgttgttgttccacttccatcaacttctcctctgcgtcaacgggaa
ggtgtgacccatgtcatacatgtgcttgggccaaatatgaatccaatgcgaccagactat
cttaagaatgactataccagagggtctaagattcttcgtgaagcatacaattcacttttt
gagaattttgcatccattgtgcagagctacatgggaaagcagaacagtgaatctggagca
gaaaagtcagcatctggagggacatctcccaatgacacaaaaatgaagcgagaggacagc
catggatctgaaaggatgaaaaaacataagttgtttcaacccattatgactgcaaagcaa
cagcatgagtgtacaaaggttaatgcttcaaattgccatgatgatgccatgacttcatct
gctgttccaagccaaactagacaagtagacaacagaaggaatgatgtggttaccagtaag
acttggggatcctgggcccagtctctttatgaacttgccatgaacccagaaaagtacaag
aactcagattctatcctggagacatcagatgaatatattgttctgaaagatctctatcca
aaggccaaaaggcatattttggtgatatctagaatggatggtcttgactctctagcagat
gtcaagaaagaacacttgcctttgttgaggaggatgcattcagctggggtgaagtgggca
cagaagttcctagaggaagatgcggctttggaattcagacttggataccattcggttcca
tcaatgcgacaattgcatcttcacatcattagccaggatttcaactctgcaagcttgaaa
aataagaaacattggaactccttcaccacatcatttttccgtgattctgttgatgtcatt
gaggagattgaacaaaatggatcaacaaccaccagcactgatgaaaaggtactcgcaatg
gaactccggtgccacaggtgcaggagcgctcatccaaacatcccaaagctgaaatcccac
atcgccatctgtaaatcttccttcccttcccatcttctgcagaaaaacaggctgttgtcc
tctacgatgcatatggaccgcacttag
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