Miscanthus floridulus: 136547112
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Entry
136547112 CDS
T10264
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
mflo Miscanthus floridulus
Pathway
mflo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
136547112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflo03400
]
136547112
DNA repair and recombination proteins [BR:
mflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
136547112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
ATG17_like
Motif
Other DBs
NCBI-GeneID:
136547112
NCBI-ProteinID:
XP_066395180
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All DBs
Position
3:complement(136828099..136838905)
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AA seq
942 aa
AA seq
DB search
MEGDDFTPEGGKLPEFKLDARQAQGFISFFKRLPQDPRAVRLFDRRDYYTAHGENATFIA
RTYYHTMSALRQLGSSSDGISSVSVSKAMFETIARNILLERTDCTLELYEGSGSNWRLTK
SGTPGNIGSFEDILFANNDMQDSPVIVALFPVCRESQLYVGLSFLDMTNRKLGLAEFPED
SRFTNVESALVALGCKECLLPEDCEKSIDLNPLREAISNCNVLLTEKKKADFKSRDLAQD
LGRIIRGSVEPVRDLLSQFDYALGPLGALLSYAELLADDTNYGNYTIEKYNLNCYMRLDS
AAVRALNIAERKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQ
ALVEDPELRQGLRQQLKRISDIDRLTHALRKKSSTLQPVVKLYQSCSRISYIKSILEQYN
GQFSTLIRSKFLEPLEEWMTEDRFGRFSSLVETAIDLDQLENGEYRISPLYSSDLGVLKD
ELSVVENHINNLHVDTASDLDLSVDKQLKLEKGPLGHVFRMSKKEEQKVRKKLTGIYLII
ETRKDGVKFTSSKLKKLSDQYQALFGEYTSCQKKVVDDVVRVSGSYSEVFENFAAVLSEL
DVLQSFADLATSCPVPYVRPEITASDEGDIVLLGSRHPCLEAQDGVNFIPNDCTLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDQASVSVRDCIFARVGAGDCQLHGV
STFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLMEVTRAPTLFAT
HFHELTALAHKNDDEHQHISNIGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVALAKSKAAELEDFSTTPTFSDDSKDEVGSKRKRVFSPDDVTRGAARTRLY
LEDLAALPMDEMDRSKIVEMVTKMRDDLQKDAADNPWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgacgacttcactccggagggcggcaagctccccgagttcaagctagatgca
aggcaagcgcagggtttcatctccttcttcaagaggctgccgcaggatccccgggccgtt
cgtctcttcgaccgcagggattattacaccgcccatggcgagaatgctacgtttattgca
aggacatactaccacacaatgtctgccttgcgtcaattaggtagcagctcagatggaatc
tcaagtgttagtgtgagcaaggctatgtttgagaccattgcccgcaacattttgttggaa
aggactgactgtacattagagctctatgagggaagtgggtcaaattggaggttaacaaag
tctggaacacctggaaatattggtagttttgaagacattctgtttgcaaacaatgacatg
caagattcaccagtcattgttgctttgtttccagtgtgccgggaaagtcagctgtatgta
gggcttagttttttggatatgaccaataggaagcttgggttagctgagttccccgaagat
agccgattcacaaatgttgaatcagctcttgtcgcattaggttgcaaggagtgtcttctc
ccagaagattgtgaaaaatccattgatctgaatccccttcgagaggccattagtaattgt
aatgttctgttgactgagaaaaagaaggctgacttcaaatccagggatcttgcacaagat
cttggtagaataatcaggggttctgttgagcctgtacgtgatctgctatctcagtttgac
tatgctcttggtccccttggagcacttttatcttatgctgagttgctagcagatgatact
aactatggaaattacacaattgagaagtacaatttgaactgctacatgcgacttgattct
gctgcagtgcgagcattaaacattgcagaaaggaaaactgatgtaaacaagaacttcagt
ttgtttggtttgatgaacagaacctgtactgttgggatgggaaaaagattgcttaacaga
tggctgaaacaacctctattagatgttaatgaaattaataaccgattagacatggttcag
gctttggtagaagacccagagcttcgtcagggactgaggcaacaacttaaaaggatatca
gatattgatcgtctaacacatgctctccgaaagaaatcatctacactgcagcctgttgtt
aagctttatcagtcctgtagcagaatctcatacatcaagagcattcttgagcaatataat
ggccaattttccacattgataaggtcaaagtttcttgaaccattagaagaatggatgaca
gaggatcgatttggtcggttttcttctcttgttgagacagctattgatcttgatcagctg
gagaatggagagtacagaatatctcctctatattcttctgacttgggtgtactaaaggat
gagctttctgtggttgaaaatcacataaataatctgcacgtggatacagctagtgatcta
gatctttctgttgataagcaactgaagctagaaaaaggacctcttggacatgtgtttaga
atgtcaaagaaagaggagcagaaagtcaggaagaagctcactggcatctacttaatcata
gaaactcgtaaagatggtgtaaagttcacaagttctaagctgaaaaagctaagtgatcaa
taccaggcactgtttggtgagtacacaagttgtcagaaaaaggtggttgatgatgtagtg
agggtttcaggctcctactcagaggtatttgaaaattttgctgcagttctgtcggagttg
gatgttttacaaagttttgctgatttagcaactagttgcccagttccttatgttaggcca
gaaatcacagcgtcggatgaaggagatattgttctactaggtagcagacatccttgtcta
gaggcacaagatggtgttaactttatacccaatgactgcactcttgtgagagggaaaagt
tggtttcagatcatcactgggccaaacatgggaggaaaatccacatttataagacaggtt
ggtgtaaatgtcttgatggcgcaagttggttcctttgtaccttgtgatcaagcaagtgtt
agtgtgagggattgtatttttgctcgtgttggtgctggtgattgccaacttcatggtgta
tcaacttttatgcaagaaatgcttgaaacagcatccatcctaaaaggtgcctctgataag
tctcttataattattgatgagctgggacgtggaacttccacatatgatggatttggtctt
gcatgggctatctgtgagcatcttatggaagtgactcgagcgcctaccttgtttgccacc
catttccatgaattaactgcattagcacataaaaatgatgatgagcaccaacacatttca
aatatcggaattgcaaattatcatgtgggtgctcacatagacccatcaagtcggaagtta
actatgctttacaaggttgaacctggtgcatgcgaccaaagttttggtattcatgttgca
gaatttgctaattttccagaagctgttgttgcccttgcaaaaagcaaagcagcagagtta
gaagacttctctactacacctaccttttctgatgattcgaaagacgaggttggatcaaag
cgcaagagggtatttagcccagatgacgtcaccagaggagctgctcggactcggctttac
cttgaggatctcgctgcattgcctatggatgagatggataggagcaagatcgtggagatg
gtcaccaaaatgagagatgatttgcagaaagatgcggctgacaatccttggcttcagcag
ttcttctga
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