Miscanthus floridulus: 136549428
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Entry
136549428 CDS
T10264
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mflo Miscanthus floridulus
Pathway
mflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136549428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mflo03019
]
136549428
03016 Transfer RNA biogenesis [BR:
mflo03016
]
136549428
Enzymes [BR:
mflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
136549428
Messenger RNA biogenesis [BR:
mflo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
136549428
Transfer RNA biogenesis [BR:
mflo03016
]
Prokaryotic type
tRNA degradation factors
136549428
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-GeneID:
136549428
NCBI-ProteinID:
XP_066396804
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All DBs
Position
4:complement(11913356..11931243)
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AA seq
881 aa
AA seq
DB search
MLAFPAVLHLLLPAPPHHHHVAFALPHPAPPLHASLPCSRRARRAPSPRHGVARASAAVA
EEASSSGPAKFSVRIPVGDREILVETGHIGRQASASVMVTDGETILYCSVCLADTPNDPA
DFFPLSVHYQERLSAAGRTSGGFFKREGKTKDHEVLVCRLIDRPLRPTMPKGFYYETQIL
SWVFSYDGIHSPDCLAITAAGIAVALSEIPNKQTIAGVRIGLINDQFVVNPTTEQMDKSE
LDLMMAGTDSAILMIEGYCDFLTEEKLLEAVEAGQVAIREICKAIDVLIQRCGKKKMVDA
ISLPPPELYRHVEDISGDELVKALQIKGKIPRRKALSALEDKVISILSEQGYVSKDGSSG
VTESLADIVEDEDEDEIIVDGEVDEGDVHIKPVSRKPPPQLFAEVDVKLVFKEVSSKYLR
RRIVEGGKRSDGRSPWELRPISSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRID
NLVDTEDSKSFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPPEKDFPYTI
RVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGSPLILS
DITGAEDASGDMDLKIAGNESGISAFQMDIKVVGITLPVMEQALLQARDGRQHILNEMSK
SSPPPSKALSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKIT
ARDLSSLEKSKTIIANLTMVPKVGEIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSG
WLAKAEDAFEVGDRIDVKLIEINDKGQLRLSSRALLPDADSESNSSPTKEKTPQKDDAIK
MTSRRPRRKRQSESSGAENATTKTLEKSAAAPAGSKGSEAA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgttccccgccgtgctccacctcctcctcccggcgccgccgcaccaccaccat
gtcgccttcgcgctcccgcaccccgcgccgccgctccacgcctcgctcccgtgctcgcgc
cgcgcgcggagggcgcccagtccaaggcatggggtcgccagggcctccgccgcagttgcg
gaggaggccagcagctccgggccggccaagttctccgtaaggatccccgtcggcgaccgc
gagatattggtggaaacgggtcacattgggaggcaagcgagtgcttctgtaatggtcacc
gatggcgaaacgattctctactgttctgtctgtctggcggatactccaaacgaccctgct
gactttttccctttatcggttcactatcaagagcgcctttcagctgctggaagaactagt
ggtggtttcttcaaacgagaaggcaagacaaaagaccatgaggttttggtttgcagattg
atagacaggcccctacgacctactatgcctaagggtttctactatgaaactcaaattcta
tcctgggtcttcagttatgatggcattcactccccggactgcttggctatcacagctgct
ggtatagccgtggccctctctgaaattccaaataaacaaacaattgctggagtaagaatt
ggcctgattaacgaccagtttgttgttaacccaactactgaacagatggataaatcagag
ttagatttgatgatggctgggactgatagtgccattttgatgattgagggctactgtgat
tttctgactgaggagaagctgcttgaagctgtggaagctgggcaggtggcaattagagaa
atctgcaaagcaattgatgttctcatccagaggtgtgggaagaagaaaatggtcgatgct
atcagcctaccgcctcctgaactctacaggcatgttgaagatatttctggagatgagttg
gtgaaggcattacaaataaaaggaaagattcccagaagaaaagctctttcagcattggag
gacaaagttataagtatactttctgaacagggttatgtttccaaagatggctcatctgga
gtcactgaaagtttggctgatattgttgaggatgaggatgaggatgaaattatagttgat
ggagaagtagatgaaggtgatgttcacatcaagccggtttcaaggaagccccctcctcag
ctatttgcagaagttgatgtcaagctagtcttcaaggaagtttcctcgaaatatttacga
aggcgcattgttgagggaggaaagcgaagtgatggacggagtccttgggaacttcggccc
attagttctcaatgtggtttacttccaagagctcatggtagtgctctgttcacgagggga
gaaacacagtcactagctgtggtcactttaggtggctatcagatggcacaacgaattgac
aaccttgttgatacagaggattcaaaaagcttctatcttcagtactcatttcctccatca
tgtgttggcgaagttggtcgaattggagcacctagccggagagagattggacatgggatg
cttgcagaaagggcactggagccaattttacctccggaaaaggattttccatacactatt
cgtgtcgagagtactatcacagaaagtaatggttcgtccagcatggcttctgtttgtgga
ggttgtttagcacttcaagatgctggggttcctataaagtttcctgttgctggaattgca
atgggcctggtccttgatacacaggaatttggtggagatggtagcccacttatactttct
gatattactggagctgaagatgcctctggtgacatggatttgaagattgctggtaatgaa
agtggcatatctgcatttcagatggacattaaggtagttgggataactctacctgtgatg
gagcaagcgctccttcaagctagggacgggagacagcatattctgaatgaaatgtcgaaa
tcttcacctccaccgtcaaaagcactatctccatatgctcccttaattcatgttatgaag
gtcaaacctaacaaggtgaatttaataattggttctggtggaaagacaataaaaagtata
attgaggagactggagtagatgctattgatactggagacgatggcacggtaaaaattact
gcaagagacctatcaagcttagagaagtcaaaaactataatagctaaccttaccatggtt
ccaaaagtcggagaaatatacaggaattgtgagatcaagtcaatagctccatatggtgct
tttgttgaaattgctccagggcgtgagggtttatgtcatatcagcgaattaagttcgggc
tggttggccaaggctgaggatgcttttgaagtcggagatcgcatagacgtcaagcttatc
gagataaatgataagggtcaacttcggctaagttctcgagctttgcttcctgacgcggat
tcagaatccaacagcagtccaacaaaagaaaagacgccacaaaaagatgatgccatcaag
atgacatcaaggagacccaggcgcaagagacagtctgagtcgtctggagctgaaaatgcc
acaacaaagactcttgagaaaagcgccgctgctccagctggttcaaagggcagtgaagcc
gcgtag
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